Variant report

Variant	rs17426432
Chromosome Location	chr15:76130390-76130391
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76125343..76127672-chr15:76128445..76130969,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12909393	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55985217	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57090077	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8182013	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8182037	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs17426432	RAB7A	trans	parietal	SCAN
rs17426432	CLEC2D	trans	lymphoblastoid	seeQTL
rs17426432	NRG4	cis	parietal	SCAN
rs17426432	FBXO22	cis	parietal	SCAN
rs17426432	LARP6	cis	cerebellum	SCAN
rs17426432	ETFA	cis	parietal	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76125200-76134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:76126200-76135000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:76127400-76130600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:76127800-76130600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:76127800-76132000	Enhancers	HMEC	breast
6	chr15:76128200-76130400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:76128400-76130600	Enhancers	HSMM	muscle
8	chr15:76128600-76130400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:76128600-76132000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:76129400-76131800	Enhancers	NHEK	skin
11	chr15:76129400-76135000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr15:76129600-76133000	Weak transcription	A549	lung
13	chr15:76129600-76133200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:76129600-76134800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:76129600-76135000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:76129600-76135000	Weak transcription	Fetal Heart	heart
17	chr15:76129600-76135200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:76129800-76130400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:76129800-76130600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr15:76129800-76133000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:76129800-76133000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:76129800-76133000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:76129800-76133000	Weak transcription	Hela-S3	cervix
24	chr15:76129800-76133000	Weak transcription	HUVEC	blood vessel
25	chr15:76129800-76133000	Weak transcription	K562	blood
26	chr15:76129800-76133000	Weak transcription	NHDF-Ad	bronchial
27	chr15:76129800-76134800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:76129800-76134800	Weak transcription	Osteobl	bone
29	chr15:76129800-76135000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:76129800-76135000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:76129800-76135000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:76129800-76135000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:76130000-76131600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:76130000-76132800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:76130000-76133000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:76130000-76133000	Weak transcription	NH-A	brain
37	chr15:76130000-76134800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:76130000-76134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:76130000-76134800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:76130000-76134800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr15:76130000-76135000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr15:76130000-76135000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:76130000-76135000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:76130000-76135000	Weak transcription	NHLF	lung

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