Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64204658..64208127-chr6:64280542..64283611,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10943869	0.80[CEU][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs1197902	0.83[TSI][hapmap]
rs1197905	0.83[TSI][hapmap]
rs12523702	0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs13200519	0.87[EUR][1000 genomes]
rs13210581	0.81[ASN][1000 genomes]
rs13217662	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1681946	0.83[TSI][hapmap]
rs1681947	0.81[TSI][hapmap]
rs1681957	0.83[TSI][hapmap]
rs17396843	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1744143	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1744153	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1779739	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1779777	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025178	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2146149	0.83[TSI][hapmap]
rs2489272	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2622274	0.83[TSI][hapmap]
rs2622312	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2753068	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2758244	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2758259	0.83[TSI][hapmap]
rs3121608	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6916092	0.81[EUR][1000 genomes]
rs71534831	0.83[EUR][1000 genomes]
rs9353016	0.83[TSI][hapmap]
rs9449291	0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv970135	chr6:64200126-64215926	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1744134	SPI1	trans	parietal	SCAN
rs1744134	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64201400-64207200	Enhancers	Hela-S3	cervix
2	chr6:64203000-64206000	Weak transcription	HepG2	liver
3	chr6:64203000-64207600	Weak transcription	Stomach Mucosa	stomach
4	chr6:64203200-64207200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:64203200-64209600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:64203400-64205200	Weak transcription	Fetal Intestine Large	intestine
7	chr6:64203600-64205400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:64203600-64206800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:64203800-64205800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:64203800-64206200	Weak transcription	A549	lung

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