Variant report

Variant	rs17441480
Chromosome Location	chr4:80207797-80207798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11930784	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1385056	0.88[CHB][hapmap]
rs17003695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003697	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17441194	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17441599	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4302482	0.82[JPT][hapmap]
rs72870849	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870900	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72872309	0.91[ASN][1000 genomes]
rs72872313	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80204200-80208800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:80204200-80211400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:80204400-80208600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:80206400-80208200	Weak transcription	Fetal Lung	lung
5	chr4:80207000-80207800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:80207200-80209200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:80207200-80209600	Enhancers	Fetal Heart	heart
8	chr4:80207600-80208600	Weak transcription	Colonic Mucosa	Colon
9	chr4:80207600-80209000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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