Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64257894..64259576-chr6:64281719..64283676,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10943869	0.81[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12523702	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs13200519	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13205487	0.84[EUR][1000 genomes]
rs13217662	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1322415	0.81[CEU][hapmap]
rs1322416	0.85[CEU][hapmap]
rs17396843	1.00[JPT][hapmap]
rs1744134	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1744143	0.90[ASN][1000 genomes]
rs1779739	0.82[EUR][1000 genomes]
rs1779777	0.90[ASN][1000 genomes]
rs2025178	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2622312	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2758244	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4543353	0.82[CEU][hapmap]
rs6916092	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71534831	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7753325	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9294269	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981154	chr6:64253950-64260109	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1744153	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64252800-64258800	Weak transcription	HepG2	liver
2	chr6:64255000-64263000	Weak transcription	Hela-S3	cervix
3	chr6:64258200-64259600	Strong transcription	Liver	Liver
4	chr6:64258600-64259200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:64258600-64263000	Weak transcription	A549	lung

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