Variant report

Variant	rs1744163
Chromosome Location	chr6:64288210-64288211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64288009..64290421-chr6:64344795..64347060,2	MCF-7	breast:
2	chr6:64287547..64289919-chr6:64344613..64346539,3	K562	blood:

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1062193	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754293	1.00[JPT][hapmap]
rs11755111	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756680	0.96[ASN][1000 genomes]
rs11757655	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759362	0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11759581	1.00[JPT][hapmap]
rs1197892	1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1210839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681953	1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1681967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894454	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16894460	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894480	0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16894491	1.00[JPT][hapmap]
rs16894493	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1744156	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872288	0.81[ASW][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1905595	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905597	1.00[JPT][hapmap]
rs1923521	0.96[ASN][1000 genomes]
rs1923522	0.96[ASN][1000 genomes]
rs2075656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622310	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2622313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396397	0.96[ASN][1000 genomes]
rs28635226	0.96[ASN][1000 genomes]
rs2881842	0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35468218	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35811627	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857527	0.95[ASN][1000 genomes]
rs4710434	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56950873	0.96[ASN][1000 genomes]
rs56977573	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57258726	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57519486	0.96[ASN][1000 genomes]
rs57899418	0.96[ASN][1000 genomes]
rs58016244	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58173616	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58374599	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58779953	0.96[ASN][1000 genomes]
rs59458355	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59589817	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60727297	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60863270	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61382532	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61426335	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61580957	0.95[ASN][1000 genomes]
rs6454298	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66500769	0.96[ASN][1000 genomes]
rs66508463	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66514362	0.81[EUR][1000 genomes]
rs66559225	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66618112	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66648865	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66683185	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66769846	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66924207	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66943356	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66984720	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67048845	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67118169	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67125777	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67260200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67549604	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67640372	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67805256	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67879075	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67885904	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929720	0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936079	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880852	0.82[ASN][1000 genomes]
rs72880876	0.96[ASN][1000 genomes]
rs72880879	0.96[ASN][1000 genomes]
rs72880884	0.96[ASN][1000 genomes]
rs72882716	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72882748	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72882751	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746492	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7766283	0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766347	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767556	0.96[ASN][1000 genomes]
rs9449520	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64284000-64294000	Weak transcription	Spleen	Spleen
2	chr6:64284000-64297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:64284200-64289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:64284200-64294200	Weak transcription	Gastric	stomach
5	chr6:64284200-64294400	Weak transcription	Lung	lung
6	chr6:64284400-64289400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:64284400-64289600	Weak transcription	Esophagus	oesophagus
8	chr6:64284400-64292600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:64284400-64294400	Weak transcription	Aorta	Aorta
10	chr6:64284400-64296200	Weak transcription	Ovary	ovary
11	chr6:64284600-64289600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:64284600-64289600	Weak transcription	Thymus	Thymus
13	chr6:64284600-64292000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:64284600-64294800	Weak transcription	Right Ventricle	heart
15	chr6:64284800-64307600	Weak transcription	Fetal Stomach	stomach
16	chr6:64285000-64289200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:64285000-64294800	Weak transcription	Stomach Mucosa	stomach
18	chr6:64285400-64289600	Weak transcription	Brain Angular Gyrus	brain
19	chr6:64285400-64289600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:64285400-64293600	Weak transcription	Fetal Heart	heart
21	chr6:64285400-64294600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:64285600-64291600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:64285600-64292800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:64285600-64295800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:64285800-64293000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:64286000-64292800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:64286200-64288400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:64286200-64290400	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr6:64286200-64290600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:64286200-64290600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:64286200-64290600	Strong transcription	K562	blood
32	chr6:64286200-64290800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr6:64286200-64291400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr6:64286200-64291400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:64286200-64291800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:64286200-64292200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:64286200-64292800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:64286200-64292800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:64286200-64292800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr6:64286200-64292800	Strong transcription	HUVEC	blood vessel
41	chr6:64286200-64293000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:64286200-64293000	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:64286200-64293000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:64286200-64293000	Strong transcription	Fetal Thymus	thymus
45	chr6:64286200-64293800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:64286200-64294000	Strong transcription	Primary B cells from cord blood	blood
47	chr6:64286200-64294000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:64286200-64294400	Strong transcription	HSMM	muscle
49	chr6:64286400-64288600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:64286400-64288800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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