Variant report

Variant	rs17452186
Chromosome Location	chr6:164531359-164531360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16896146	0.96[EUR][1000 genomes]
rs17549355	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456929	0.90[CEU][hapmap];0.99[EUR][1000 genomes]
rs9456930	0.92[CEU][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes]
rs9458986	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs9458987	0.99[EUR][1000 genomes]
rs9458989	0.92[CEU][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1828570	chr6:164528407-164546547	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164523400-164536400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:164524800-164531800	Enhancers	Fetal Muscle Leg	muscle
3	chr6:164527200-164531600	Enhancers	Fetal Heart	heart
4	chr6:164528000-164537200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:164529600-164531600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:164529800-164531800	Enhancers	Lung	lung
7	chr6:164530800-164531400	Enhancers	Liver	Liver
8	chr6:164530800-164531600	Weak transcription	Psoas Muscle	Psoas
9	chr6:164530800-164534600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:164530800-164535600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:164531000-164531400	Enhancers	Adipose Nuclei	Adipose
12	chr6:164531000-164531400	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:164531000-164534400	Weak transcription	Right Ventricle	heart
14	chr6:164531200-164531800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:164531200-164532000	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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