Variant report

Variant	rs17457568
Chromosome Location	chr14:35732958-35732959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35730609..35736672-chr14:35871862..35876542,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10134120	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10137628	0.98[EUR][1000 genomes]
rs10138507	0.86[EUR][1000 genomes]
rs10141392	0.81[EUR][1000 genomes]
rs10438061	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17103097	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17103098	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17103110	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17456102	1.00[AFR][1000 genomes]
rs17457389	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17458137	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17458214	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17458367	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17458562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17458715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17511093	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs17512725	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17513024	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17535082	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17536892	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17536948	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17537213	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17537248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17595975	1.00[AFR][1000 genomes]
rs17597246	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17597667	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17598437	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17598701	1.00[AFR][1000 genomes]
rs17598816	1.00[AFR][1000 genomes]
rs2057336	1.00[AFR][1000 genomes]
rs2057339	1.00[AFR][1000 genomes]
rs28446606	0.86[EUR][1000 genomes]
rs28472413	0.86[EUR][1000 genomes]
rs28510695	0.98[EUR][1000 genomes]
rs28549180	0.86[EUR][1000 genomes]
rs45573840	1.00[AFR][1000 genomes]
rs4982256	0.85[EUR][1000 genomes]
rs6571711	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7140912	1.00[CEU][hapmap]
rs7143518	1.00[AFR][1000 genomes]
rs7146216	1.00[AFR][1000 genomes]
rs7147426	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7150752	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7151763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7154558	0.87[CEU][hapmap]
rs7155406	1.00[AFR][1000 genomes]
rs7156874	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7159008	1.00[CEU][hapmap]
rs8005196	0.87[CEU][hapmap]
rs8014945	1.00[AFR][1000 genomes]
rs8015909	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
8	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
9	esv2754534	chr14:35690978-35744839	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv976329	chr14:35731199-35734370	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35661000-35736400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:35672000-35742200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:35674800-35737000	Weak transcription	Lung	lung
4	chr14:35684600-35737000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:35684600-35760800	Weak transcription	HSMM	muscle
6	chr14:35686800-35735800	Weak transcription	Fetal Intestine Large	intestine
7	chr14:35690600-35735800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:35691200-35735800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:35699800-35735800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:35700200-35738000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:35700400-35735800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:35705400-35749800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:35705800-35735800	Weak transcription	HMEC	breast
14	chr14:35706800-35760800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:35709800-35753600	Weak transcription	Small Intestine	intestine
16	chr14:35710200-35736000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:35711000-35737000	Weak transcription	Aorta	Aorta
18	chr14:35712400-35735800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:35714800-35735800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr14:35716600-35739200	Weak transcription	Adipose Nuclei	Adipose
21	chr14:35716800-35760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:35716800-35761000	Weak transcription	Spleen	Spleen
23	chr14:35717000-35760800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:35717600-35753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:35718200-35741000	Weak transcription	Fetal Lung	lung
26	chr14:35718800-35736600	Weak transcription	Fetal Stomach	stomach
27	chr14:35720000-35744800	Weak transcription	Fetal Brain Male	brain
28	chr14:35720200-35735800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr14:35722000-35754000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:35722000-35760800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:35724200-35736000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:35724200-35739000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr14:35724200-35756400	Weak transcription	Left Ventricle	heart
34	chr14:35724400-35742400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr14:35725000-35735800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:35727000-35735800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr14:35727000-35736400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:35727200-35741800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:35727200-35742400	Weak transcription	Osteobl	bone
40	chr14:35727200-35742600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:35727200-35744200	Weak transcription	Fetal Heart	heart
42	chr14:35727200-35754600	Weak transcription	NHDF-Ad	bronchial
43	chr14:35727200-35756400	Weak transcription	Stomach Mucosa	stomach
44	chr14:35727200-35761000	Weak transcription	NHLF	lung
45	chr14:35727400-35736200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:35727400-35739400	Weak transcription	NHEK	skin
47	chr14:35727400-35754000	Weak transcription	HUVEC	blood vessel
48	chr14:35727600-35736000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:35727600-35742200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:35727600-35743400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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