Variant report

Variant	rs1746332
Chromosome Location	chr9:15171279-15171280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:94585854..94588550-chr9:15169410..15171976,2	K562	blood:
2	chr9:15163944..15166887-chr9:15170115..15173415,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16932763	1.00[AMR][1000 genomes]
rs16932765	1.00[AMR][1000 genomes]
rs16932789	1.00[AMR][1000 genomes]
rs16932883	1.00[AMR][1000 genomes]
rs16932884	1.00[AMR][1000 genomes]
rs16932885	1.00[AMR][1000 genomes]
rs16932897	1.00[AMR][1000 genomes]
rs16932898	1.00[AMR][1000 genomes]
rs2800590	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3866793	1.00[AMR][1000 genomes]
rs3915739	1.00[AMR][1000 genomes]
rs511591	1.00[AMR][1000 genomes]
rs56149191	1.00[AMR][1000 genomes]
rs56362643	1.00[AMR][1000 genomes]
rs7852971	1.00[AMR][1000 genomes]
rs7871928	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524381	chr9:15165032-15202417	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15155600-15181400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:15156800-15173800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:15156800-15175600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:15156800-15181600	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
8	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:15159000-15177000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:15159000-15211200	Weak transcription	HMEC	breast
11	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:15161200-15181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:15162000-15181600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:15162000-15183800	Weak transcription	Fetal Intestine Small	intestine
15	chr9:15162800-15193000	Weak transcription	Spleen	Spleen
16	chr9:15163000-15175200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:15163200-15176000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:15163200-15185400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:15163200-15186800	Weak transcription	Fetal Kidney	kidney
21	chr9:15163400-15179000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:15163400-15181400	Weak transcription	Fetal Stomach	stomach
23	chr9:15163800-15185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:15164400-15178400	Weak transcription	Fetal Brain Male	brain
25	chr9:15164600-15172200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:15165200-15176600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:15165400-15181800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr9:15166000-15185200	Weak transcription	Pancreas	Pancrea
29	chr9:15166200-15211200	Weak transcription	NH-A	brain
30	chr9:15166400-15185200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:15166600-15173400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:15166600-15173600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:15166600-15180600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:15166600-15185200	Weak transcription	Lung	lung
35	chr9:15166800-15181400	Weak transcription	Gastric	stomach
36	chr9:15167000-15196400	Weak transcription	Psoas Muscle	Psoas
37	chr9:15167400-15189000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:15167400-15205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:15167600-15173400	Weak transcription	Left Ventricle	heart
40	chr9:15167600-15183600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr9:15167600-15185400	Weak transcription	Colonic Mucosa	Colon
42	chr9:15167800-15193400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr9:15167800-15196200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr9:15168000-15172000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:15168000-15173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:15168000-15177200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr9:15168000-15177800	Strong transcription	Liver	Liver
48	chr9:15168000-15181000	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:15168000-15181400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr9:15168000-15182200	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links