Variant report

Variant	rs17465510
Chromosome Location	chr15:77264576-77264577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77257686..77261263-chr15:77264226..77266694,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10519151	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs11072639	0.81[TSI][hapmap]
rs12438566	0.91[MKK][hapmap]
rs16968536	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs16968625	1.00[CEU][hapmap]
rs16968627	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes]
rs2137309	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]
rs2221866	0.87[CEU][hapmap]
rs3825892	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs62007173	0.88[EUR][1000 genomes]
rs62007205	0.88[EUR][1000 genomes]
rs62007206	0.88[EUR][1000 genomes]
rs62007207	0.87[EUR][1000 genomes]
rs62027296	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62027304	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62027307	0.91[EUR][1000 genomes]
rs7164654	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]
rs7179043	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1808532	chr15:77257714-77332539	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17465510	TSPAN3	cis	lymphoblastoid	seeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77256400-77265200	Weak transcription	Aorta	Aorta
2	chr15:77256800-77264800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:77257000-77265000	Weak transcription	NHEK	skin
4	chr15:77259800-77264600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:77259800-77268400	Weak transcription	Fetal Thymus	thymus
6	chr15:77260000-77264800	Weak transcription	HUVEC	blood vessel
7	chr15:77260000-77265000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:77260000-77265200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:77260000-77265200	Weak transcription	Left Ventricle	heart
10	chr15:77260000-77265200	Weak transcription	Psoas Muscle	Psoas
11	chr15:77260000-77266000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:77260000-77266000	Weak transcription	Brain Anterior Caudate	brain
13	chr15:77260400-77264800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:77260400-77264800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:77260400-77265400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:77260600-77265200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:77261000-77264800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:77261000-77265000	Weak transcription	Ovary	ovary
19	chr15:77263600-77264600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:77264200-77265600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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