Variant report

Variant	rs17466783
Chromosome Location	chr4:7744627-7744628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13115302	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13151500	0.84[ASN][1000 genomes]
rs34769859	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv878574	chr4:7715181-7751894	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv878575	chr4:7715181-7767755	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv878576	chr4:7720919-7746820	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7726600-7757200	Weak transcription	Fetal Brain Female	brain
2	chr4:7739800-7745000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:7739800-7745000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:7740200-7765000	Weak transcription	Aorta	Aorta
5	chr4:7740400-7745000	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:7740400-7745400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:7740400-7745800	Weak transcription	Esophagus	oesophagus
8	chr4:7740400-7746400	Weak transcription	Colonic Mucosa	Colon
9	chr4:7740600-7745200	Weak transcription	Brain Angular Gyrus	brain
10	chr4:7740600-7762400	Weak transcription	Pancreas	Pancrea
11	chr4:7740800-7745200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:7741000-7757800	Weak transcription	Lung	lung
13	chr4:7741400-7744800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:7741400-7745800	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:7741400-7755000	Weak transcription	Fetal Intestine Small	intestine
16	chr4:7741400-7755200	Weak transcription	Brain Germinal Matrix	brain
17	chr4:7742000-7746400	Weak transcription	Ovary	ovary
18	chr4:7742000-7749400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:7742800-7744800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:7743400-7745400	Weak transcription	Spleen	Spleen
21	chr4:7743600-7745000	Weak transcription	Fetal Stomach	stomach
22	chr4:7743600-7745200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:7744000-7752800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr4:7744200-7746400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:7744400-7745200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr4:7744600-7744800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:7744600-7746000	Enhancers	Brain Substantia Nigra	brain

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