Variant report

Variant	rs17473962
Chromosome Location	chr4:148119828-148119829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12650484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1507486	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567180	0.86[ASN][1000 genomes]
rs17022750	0.86[ASN][1000 genomes]
rs17022758	0.86[ASN][1000 genomes]
rs17022766	0.86[ASN][1000 genomes]
rs17022775	0.86[ASN][1000 genomes]
rs17473990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857978	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357607	0.86[ASN][1000 genomes]
rs2357610	0.86[ASN][1000 genomes]
rs2357613	0.86[ASN][1000 genomes]
rs2562885	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2714885	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2714893	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2714896	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs33994222	1.00[ASN][1000 genomes]
rs34007387	0.96[ASN][1000 genomes]
rs34132878	0.86[ASN][1000 genomes]
rs34311913	0.86[ASN][1000 genomes]
rs34644859	0.96[ASN][1000 genomes]
rs34857595	0.86[ASN][1000 genomes]
rs35313093	0.96[ASN][1000 genomes]
rs35808782	0.96[ASN][1000 genomes]
rs4333163	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62341527	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62341528	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62341531	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62341532	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62341533	0.96[ASN][1000 genomes]
rs62341534	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62341536	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62341537	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62341557	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62342965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342993	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62343017	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6537453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662895	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148116200-148120800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:148117800-148121800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:148118000-148120400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:148118800-148120000	Enhancers	A549	lung
5	chr4:148119000-148120200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:148119000-148120200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:148119000-148120200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:148119000-148120200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:148119000-148120200	Enhancers	Fetal Lung	lung
10	chr4:148119000-148120400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:148119000-148120400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:148119000-148120400	Enhancers	HUVEC	blood vessel
13	chr4:148119000-148120800	Enhancers	NHLF	lung
14	chr4:148119200-148120200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:148119200-148120400	Enhancers	HSMM	muscle
16	chr4:148119400-148120000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr4:148119400-148120000	Enhancers	Fetal Heart	heart
18	chr4:148119600-148120000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:148119600-148120000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:148119600-148120200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr4:148119600-148120400	Enhancers	Fetal Stomach	stomach
22	chr4:148119600-148120400	Enhancers	HSMMtube	muscle
23	chr4:148119600-148120600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:148119800-148120000	Enhancers	Fetal Kidney	kidney
25	chr4:148119800-148120200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:148119800-148120200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:148119800-148120200	Enhancers	NH-A	brain

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