Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11939191	1.00[TSI][hapmap]
rs1517135	1.00[TSI][hapmap]
rs1816279	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562864	0.86[ASN][1000 genomes]
rs2562885	0.89[ASN][1000 genomes]
rs2714885	1.00[ASN][1000 genomes]
rs2714893	0.96[ASN][1000 genomes]
rs2714896	0.96[ASN][1000 genomes]
rs4333163	0.89[ASN][1000 genomes]
rs62341479	1.00[AFR][1000 genomes]
rs62341480	1.00[AFR][1000 genomes]
rs62341524	1.00[AFR][1000 genomes]
rs62342965	0.82[ASN][1000 genomes]
rs62342966	0.82[ASN][1000 genomes]
rs62342967	0.82[ASN][1000 genomes]
rs62342970	0.82[ASN][1000 genomes]
rs62342993	0.89[ASN][1000 genomes]
rs62343017	0.89[ASN][1000 genomes]
rs62343027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308221	1.00[TSI][hapmap]
rs9997823	1.00[TSI][hapmap]
rs9999853	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv4540	chr4:148230593-148275778	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148234600-148247800	Weak transcription	Fetal Stomach	stomach
2	chr4:148238000-148255800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:148240200-148246200	Weak transcription	Fetal Lung	lung
4	chr4:148240200-148247000	Weak transcription	Fetal Kidney	kidney
5	chr4:148240400-148246200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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