Variant report

Variant	rs17478096
Chromosome Location	chr7:145682127-145682128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145680328..145682466-chr7:145758892..145760742,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12703749	0.84[EUR][1000 genomes]
rs13233813	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13240373	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517764	0.93[ASN][1000 genomes]
rs17169912	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17400407	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34036926	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34515851	0.93[ASN][1000 genomes]
rs34554035	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34797950	0.87[EUR][1000 genomes]
rs35084927	0.81[AFR][1000 genomes]
rs35159841	0.93[ASN][1000 genomes]
rs35510964	0.93[ASN][1000 genomes]
rs35708343	0.93[ASN][1000 genomes]
rs4596568	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55963320	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57886306	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58893674	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62503430	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62503433	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6951652	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6968866	0.93[ASN][1000 genomes]
rs71530716	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7458160	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7458162	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv889385	chr7:145617629-145803095	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145676800-145682600	Weak transcription	K562	blood

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