Variant report

Variant	rs17479202
Chromosome Location	chr9:71178347-71178348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71176910..71179720-chr9:110249611..110251759,2	MCF-7	breast:
2	chr9:71177353..71179557-chr9:71180361..71182323,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10511959	1.00[ASN][1000 genomes]
rs13284137	1.00[ASN][1000 genomes]
rs13288798	1.00[ASN][1000 genomes]
rs13288885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13290124	1.00[ASN][1000 genomes]
rs13296119	1.00[ASN][1000 genomes]
rs13297946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054758	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206324	1.00[ASN][1000 genomes]
rs34267520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34344868	1.00[ASN][1000 genomes]
rs34377966	1.00[ASN][1000 genomes]
rs34412731	1.00[ASN][1000 genomes]
rs34436601	1.00[ASN][1000 genomes]
rs34532945	1.00[ASN][1000 genomes]
rs34763246	1.00[ASN][1000 genomes]
rs35029924	1.00[ASN][1000 genomes]
rs35551873	1.00[ASN][1000 genomes]
rs35596772	1.00[ASN][1000 genomes]
rs35666199	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560237	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045561	1.00[ASN][1000 genomes]
rs7048633	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71501771	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71503634	1.00[ASN][1000 genomes]
rs772	1.00[ASN][1000 genomes]
rs7858883	1.00[ASN][1000 genomes]
rs7859065	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71174200-71181600	Weak transcription	Gastric	stomach
2	chr9:71175200-71181000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:71175400-71179600	Weak transcription	Pancreas	Pancrea
4	chr9:71175800-71178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:71175800-71179600	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:71175800-71179600	Weak transcription	Left Ventricle	heart
7	chr9:71175800-71179800	Weak transcription	Stomach Mucosa	stomach
8	chr9:71175800-71183400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:71176200-71178800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:71176200-71180000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:71176200-71180800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:71176200-71182200	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:71176200-71182200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:71176200-71182400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:71176400-71178800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:71176400-71179000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:71177000-71178400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:71177200-71178400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:71177200-71178400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr9:71177200-71178600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr9:71177400-71178400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:71177400-71178400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
23	chr9:71177400-71179400	Weak transcription	Primary B cells from cord blood	blood
24	chr9:71177600-71178600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr9:71177600-71182000	Weak transcription	Lung	lung
26	chr9:71177800-71178400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:71177800-71178400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
28	chr9:71178000-71180200	Weak transcription	Fetal Kidney	kidney
29	chr9:71178200-71178400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr9:71178200-71178400	Enhancers	Fetal Stomach	stomach

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