Variant report

Variant	rs17481834
Chromosome Location	chr2:37528349-37528350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37526501..37528416-chr2:37533023..37534788,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10198835	0.93[CEU][hapmap]
rs11124576	1.00[ASW][hapmap];0.93[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124578	0.86[CEU][hapmap]
rs11689186	0.93[CEU][hapmap];0.80[GIH][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs1477055	0.87[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap]
rs17409947	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2110963	1.00[ASW][hapmap];0.93[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2160394	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2268987	0.82[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap]
rs2300881	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs2300884	0.87[CEU][hapmap];0.83[YRI][hapmap]
rs2300885	1.00[ASW][hapmap];0.93[CEU][hapmap];0.81[CHD][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2300892	0.93[CEU][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2302650	0.93[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2302653	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2888463	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3770763	0.93[CEU][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3819892	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670192	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4670195	0.81[GIH][hapmap]
rs55991517	0.94[EUR][1000 genomes]
rs56059107	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59262093	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61208496	0.94[EUR][1000 genomes]
rs6726709	1.00[ASW][hapmap];0.93[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72792821	0.94[EUR][1000 genomes]
rs72792835	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs876461	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17481834	QPCT	cis	parietal	SCAN
rs17481834	CEBPZ	cis	lymphoblastoid	seeQTL
rs17481834	ATL2	cis	cerebellum	SCAN

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
2	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
3	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
6	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
7	chr2:37499400-37528600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
10	chr2:37500200-37530200	Weak transcription	Gastric	stomach
11	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
12	chr2:37502200-37528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:37502600-37528600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
15	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
16	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:37502800-37528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:37502800-37528800	Weak transcription	Brain Hippocampus Middle	brain
19	chr2:37502800-37533800	Weak transcription	Lung	lung
20	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
21	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:37509600-37528600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
25	chr2:37510800-37532200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:37511000-37533600	Weak transcription	Left Ventricle	heart
27	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:37511200-37530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:37511200-37534600	Weak transcription	HSMMtube	muscle
30	chr2:37511800-37528600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:37513600-37543200	Weak transcription	NHLF	lung
32	chr2:37515600-37530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:37515600-37539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr2:37516000-37528600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:37516600-37528600	Weak transcription	NHDF-Ad	bronchial
37	chr2:37516600-37532800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
39	chr2:37517400-37542400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:37517600-37537800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr2:37518200-37539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr2:37518800-37532600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr2:37518800-37539000	Weak transcription	Fetal Lung	lung
44	chr2:37518800-37545400	Weak transcription	NH-A	brain
45	chr2:37519000-37529800	Weak transcription	Fetal Thymus	thymus
46	chr2:37519000-37534200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr2:37519000-37549400	Weak transcription	HSMM	muscle
48	chr2:37519200-37528600	Weak transcription	Colon Smooth Muscle	Colon
49	chr2:37519200-37528800	Weak transcription	Hela-S3	cervix
50	chr2:37519200-37529000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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