Variant report

Variant	rs17490468
Chromosome Location	chr7:104312217-104312218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104306069..104307978-chr7:104312214..104314439,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10216008	0.84[AMR][1000 genomes]
rs10242238	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10245966	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10246540	0.82[CEU][hapmap]
rs10265185	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10275240	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10277884	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10280659	0.84[EUR][1000 genomes]
rs10487218	0.82[CEU][hapmap]
rs11760660	1.00[JPT][hapmap]
rs11762558	0.84[EUR][1000 genomes]
rs11766478	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11770573	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11773248	0.82[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11977439	0.82[CEU][hapmap]
rs13438590	1.00[JPT][hapmap]
rs17139736	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17421950	1.00[JPT][hapmap]
rs17490509	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs17490551	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs17490586	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1990704	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs2193204	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs2193212	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2891725	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs2891729	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs35022976	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3919550	0.82[CEU][hapmap]
rs4130477	1.00[JPT][hapmap]
rs4131017	1.00[YRI][hapmap]
rs4236571	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs4317508	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs4620217	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs59929156	0.92[EUR][1000 genomes]
rs6948948	0.82[CEU][hapmap]
rs6950059	1.00[JPT][hapmap]
rs6964099	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs6967399	0.82[CEU][hapmap]
rs73181816	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73181817	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7791120	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7801040	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7805947	0.85[CEU][hapmap]
rs962648	0.85[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970927	chr7:104307903-104312412	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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