Variant report

Variant	rs1749407
Chromosome Location	chr1:155866634-155866635
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155864077..155867922-chr1:155886880..155891317,4	MCF-7	breast:
2	chr1:155862181..155863978-chr1:155864920..155867045,2	K562	blood:

Variant related genes	Relation type
ENSG00000207475	Chromatin interaction
ENSG00000132680	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1010033	0.89[EUR][1000 genomes]
rs1018730	0.89[EUR][1000 genomes]
rs1055184	0.91[EUR][1000 genomes]
rs10908485	0.92[EUR][1000 genomes]
rs11264421	0.87[EUR][1000 genomes]
rs12039053	0.89[EUR][1000 genomes]
rs12138833	0.89[EUR][1000 genomes]
rs12747344	0.91[EUR][1000 genomes]
rs1749408	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1749409	0.91[EUR][1000 genomes]
rs1765275	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1964951	0.88[EUR][1000 genomes]
rs2275079	0.91[EUR][1000 genomes]
rs2275081	0.91[EUR][1000 genomes]
rs2364402	0.89[EUR][1000 genomes]
rs2364404	0.89[EUR][1000 genomes]
rs28379575	0.88[EUR][1000 genomes]
rs2886069	0.89[EUR][1000 genomes]
rs34802187	0.91[EUR][1000 genomes]
rs35374730	0.93[EUR][1000 genomes]
rs35730001	0.88[EUR][1000 genomes]
rs3768280	0.91[EUR][1000 genomes]
rs4412586	0.91[EUR][1000 genomes]
rs4661160	0.89[EUR][1000 genomes]
rs4661162	0.89[EUR][1000 genomes]
rs4661170	0.88[EUR][1000 genomes]
rs4661172	0.89[EUR][1000 genomes]
rs493446	0.91[EUR][1000 genomes]
rs506688	0.91[EUR][1000 genomes]
rs527113	0.91[EUR][1000 genomes]
rs536870	0.91[EUR][1000 genomes]
rs572609	0.91[EUR][1000 genomes]
rs605025	0.92[EUR][1000 genomes]
rs6660802	0.91[EUR][1000 genomes]
rs6667096	0.91[EUR][1000 genomes]
rs708614	0.91[EUR][1000 genomes]
rs71628697	0.92[EUR][1000 genomes]
rs822502	0.83[EUR][1000 genomes]
rs822503	0.92[EUR][1000 genomes]
rs822653	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155830000-155869000	Weak transcription	Gastric	stomach
2	chr1:155830600-155866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:155841800-155869200	Weak transcription	Right Ventricle	heart
4	chr1:155844400-155874000	Weak transcription	Fetal Brain Male	brain
5	chr1:155850600-155873600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:155851400-155867400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:155851600-155866800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:155851600-155870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:155854200-155868600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:155854400-155873600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:155854800-155868800	Weak transcription	Ovary	ovary
12	chr1:155862800-155873600	Weak transcription	Psoas Muscle	Psoas
13	chr1:155863000-155869600	Weak transcription	Fetal Heart	heart
14	chr1:155863200-155870000	Weak transcription	Colonic Mucosa	Colon
15	chr1:155863400-155867400	Weak transcription	Dnd41	blood
16	chr1:155863400-155868800	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:155863400-155868800	Weak transcription	Left Ventricle	heart
18	chr1:155863400-155873600	Weak transcription	Stomach Mucosa	stomach
19	chr1:155863400-155880200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:155863600-155868400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:155863800-155868800	Weak transcription	Brain Substantia Nigra	brain
22	chr1:155863800-155874000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:155864000-155867400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:155864000-155867400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:155864000-155867400	Weak transcription	Primary T cells from cord blood	blood
26	chr1:155864000-155867400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:155864000-155867400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr1:155864000-155867400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:155864000-155867400	Weak transcription	Fetal Lung	lung
30	chr1:155864000-155867400	Weak transcription	K562	blood
31	chr1:155864000-155868400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:155864000-155868800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:155864000-155868800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr1:155864000-155868800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:155864000-155868800	Weak transcription	Fetal Kidney	kidney
36	chr1:155864000-155868800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:155864000-155868800	Weak transcription	Small Intestine	intestine
38	chr1:155864000-155869000	Weak transcription	Aorta	Aorta
39	chr1:155864000-155869000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr1:155864200-155866800	Weak transcription	NH-A	brain
41	chr1:155864200-155866800	Weak transcription	NHEK	skin
42	chr1:155864200-155867400	Weak transcription	NHDF-Ad	bronchial
43	chr1:155864200-155868400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:155864200-155868400	Weak transcription	Brain Germinal Matrix	brain
45	chr1:155864200-155868600	Weak transcription	HMEC	breast
46	chr1:155864200-155868800	Weak transcription	Hela-S3	cervix
47	chr1:155864200-155869000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr1:155864200-155869000	Weak transcription	HepG2	liver
49	chr1:155864200-155869000	Weak transcription	HSMMtube	muscle
50	chr1:155864600-155867000	Weak transcription	HUVEC	blood vessel

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