Variant report

Variant	rs17496657
Chromosome Location	chr7:101748634-101748635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10231704	1.00[CHB][hapmap]
rs10243429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245459	1.00[CHB][hapmap]
rs10246310	1.00[CHB][hapmap]
rs10249739	1.00[CHB][hapmap]
rs10252737	1.00[CHB][hapmap]
rs10259603	1.00[CHB][hapmap]
rs10259857	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261132	1.00[CHB][hapmap]
rs10271376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271680	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769397	1.00[CHB][hapmap]
rs11975153	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975663	1.00[CHB][hapmap]
rs12537526	1.00[CHB][hapmap]
rs12538286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538988	0.80[EUR][1000 genomes]
rs12539349	1.00[CHB][hapmap]
rs12539846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734886	0.87[ASN][1000 genomes]
rs17409879	1.00[CHB][hapmap]
rs17410356	1.00[CHB][hapmap]
rs17495148	1.00[CHB][hapmap]
rs28401723	1.00[ASN][1000 genomes]
rs28603325	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs382934	0.85[CEU][hapmap]
rs55851631	0.80[ASN][1000 genomes]
rs59220714	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465850	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67245174	0.86[ASN][1000 genomes]
rs6959475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973312	1.00[CHB][hapmap]
rs73187803	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187816	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780631	1.00[CHB][hapmap]
rs7797764	1.00[CHB][hapmap]
rs7798358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801220	0.86[CEU][hapmap]
rs7805379	1.00[CHB][hapmap]
rs7807344	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655774	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
6	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
7	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
9	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
12	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
15	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
17	chr7:101739000-101760600	Weak transcription	NHLF	lung
18	chr7:101739200-101760600	Weak transcription	HSMM	muscle
19	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
21	chr7:101739600-101752000	Strong transcription	Thymus	Thymus
22	chr7:101740200-101753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:101740400-101751800	Strong transcription	Spleen	Spleen
24	chr7:101740400-101763400	Strong transcription	Dnd41	blood
25	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:101740800-101752000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:101741000-101751600	Strong transcription	Fetal Stomach	stomach
28	chr7:101741000-101751800	Strong transcription	Adipose Nuclei	Adipose
29	chr7:101741000-101757200	Weak transcription	NH-A	brain
30	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:101741200-101751400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:101741200-101753000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:101741400-101751800	Strong transcription	Liver	Liver
34	chr7:101741400-101754000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:101741600-101750000	Weak transcription	Fetal Brain Female	brain
36	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
37	chr7:101741800-101751400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr7:101742400-101751600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:101742400-101752200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:101743200-101753200	Strong transcription	Fetal Intestine Small	intestine
41	chr7:101743600-101751400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:101743600-101751400	Strong transcription	Primary B cells from cord blood	blood
43	chr7:101743600-101752000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:101743600-101754400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr7:101744000-101750600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr7:101744200-101751400	Strong transcription	Fetal Muscle Leg	muscle
47	chr7:101744400-101754800	Strong transcription	Fetal Intestine Large	intestine
48	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
49	chr7:101744800-101754000	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:101745000-101749600	Strong transcription	Placenta	Placenta

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