Variant report

Variant	rs17499156
Chromosome Location	chr2:180573295-180573296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180572677..180575334-chr2:180870803..180873045,2	K562	blood:
2	chr2:180572088..180573677-chr2:180578473..180581358,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163510	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10177883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12467122	0.80[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs13407248	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1462208	0.80[CHD][hapmap];0.95[JPT][hapmap]
rs1515294	0.87[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs16866934	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16866936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16866942	0.89[EUR][1000 genomes]
rs16866943	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16866944	0.81[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs16866945	0.81[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs16866953	0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs17496658	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17499149	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1964081	0.87[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs2840142	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142641	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58143036	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59431424	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61200535	0.89[EUR][1000 genomes]
rs73973703	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs746701	0.82[CEU][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes]
rs7559882	0.87[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap]
rs7582108	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs881737	0.87[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180571600-180577600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180572200-180574400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:180572600-180574600	Weak transcription	Lung	lung
4	chr2:180572600-180582200	Weak transcription	Right Atrium	heart
5	chr2:180573000-180576000	Weak transcription	Gastric	stomach
6	chr2:180573200-180576800	Enhancers	Placenta Amnion	Placenta Amnion

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