Variant report

Variant	rs17500631
Chromosome Location	chr10:52627572-52627573
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10508934	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs12776639	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783070	1.00[YRI][hapmap]
rs17500846	1.00[YRI][hapmap]
rs17591401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17591964	0.94[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs2660210	1.00[CHB][hapmap]
rs34862725	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34899345	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856593	0.89[EUR][1000 genomes]
rs6479768	0.94[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs72787059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52617800-52634200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52619800-52639800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:52622800-52643000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52626000-52627800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:52626200-52628200	Strong transcription	HepG2	liver
7	chr10:52626800-52632200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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