Variant report

Variant	rs17504106
Chromosome Location	chr5:160469639-160469640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10074226	0.80[AMR][1000 genomes]
rs11739699	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12109263	0.82[EUR][1000 genomes]
rs17444992	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17503515	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs368539	0.83[EUR][1000 genomes]
rs3862066	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55812059	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62391257	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73297794	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026519	chr5:160145143-160785295	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv830533	chr5:160464698-160605045	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17504106	FABP6	cis	parietal	SCAN
rs17504106	CCNJL	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:160467800-160469800	Enhancers	Fetal Intestine Large	intestine
2	chr5:160468200-160469800	Enhancers	Fetal Intestine Small	intestine
3	chr5:160468800-160470200	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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