Variant report

Variant	rs17515243
Chromosome Location	chr14:33112870-33112871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10135562	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10141122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144339	0.90[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10147066	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10483416	0.95[CEU][hapmap];0.96[GIH][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs11844389	0.86[EUR][1000 genomes]
rs11846446	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12323757	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12323763	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12323766	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12880113	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1884619	0.88[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1956223	0.95[CEU][hapmap];0.92[GIH][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs34340539	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4981994	0.85[CEU][hapmap]
rs7141374	0.86[EUR][1000 genomes]
rs71419918	0.89[ASN][1000 genomes]
rs71419919	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142867	0.86[EUR][1000 genomes]
rs927062	0.95[CEU][hapmap];0.92[GIH][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:33103200-33114600	Weak transcription	Aorta	Aorta
3	chr14:33104600-33120400	Weak transcription	HSMMtube	muscle
4	chr14:33104800-33116400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:33105000-33117000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:33105000-33117200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:33105200-33116000	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:33105200-33116400	Weak transcription	Brain Angular Gyrus	brain
9	chr14:33107000-33130600	Weak transcription	Left Ventricle	heart
10	chr14:33107800-33113000	Weak transcription	Fetal Heart	heart
11	chr14:33110400-33116600	Weak transcription	NHDF-Ad	bronchial

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