Variant report

Variant	rs17516342
Chromosome Location	chr13:67682628-67682629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67681587..67685897-chr13:67688405..67692463,6	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11148739	0.93[CHB][hapmap];0.93[CHD][hapmap];0.94[MEX][hapmap]
rs11839518	0.93[CHB][hapmap]
rs12427923	0.80[AMR][1000 genomes]
rs12429101	0.87[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.94[MEX][hapmap]
rs12430605	0.83[CEU][hapmap];0.93[CHB][hapmap]
rs12430801	0.93[CHB][hapmap]
rs12862246	0.93[CHB][hapmap]
rs1323905	0.91[JPT][hapmap]
rs1543618	0.93[CHB][hapmap];0.93[CHD][hapmap];0.94[MEX][hapmap]
rs1547143	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17082149	0.93[CHB][hapmap];0.93[CHD][hapmap]
rs17791044	0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs17791050	0.83[AMR][1000 genomes]
rs1927813	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs1927814	0.93[CHB][hapmap]
rs1927822	0.83[MKK][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes]
rs2025971	0.91[JPT][hapmap]
rs4883795	0.93[CHB][hapmap]
rs4883796	0.93[CHB][hapmap];0.93[CHD][hapmap];0.94[MEX][hapmap]
rs73211183	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7331374	0.93[CHB][hapmap]
rs7984967	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8000291	0.93[CHB][hapmap]
rs8000469	0.93[CHB][hapmap];0.82[MEX][hapmap]
rs952324	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1040715	chr13:67668189-67699198	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv832641	chr13:67671691-67708713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67681000-67686800	Weak transcription	Right Ventricle	heart
2	chr13:67682400-67687600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:67682400-67688000	Weak transcription	Brain Substantia Nigra	brain
4	chr13:67682400-67688200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:67682400-67688200	Weak transcription	A549	lung

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