Variant report

Variant	rs17517438
Chromosome Location	chr13:67706142-67706143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1022866	1.00[CHD][hapmap]
rs1028899	0.95[ASN][1000 genomes]
rs10492596	0.82[CEU][hapmap]
rs10492597	0.82[CEU][hapmap]
rs10507741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11148738	0.82[CEU][hapmap]
rs12184736	0.82[CEU][hapmap]
rs1323923	1.00[CHB][hapmap]
rs155010	1.00[CHD][hapmap]
rs17195266	1.00[CEU][hapmap]
rs17517286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587572	1.00[CEU][hapmap]
rs17588668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17589427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791056	0.82[CEU][hapmap]
rs1927811	0.95[ASN][1000 genomes]
rs1927812	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs260139	1.00[CHD][hapmap]
rs260140	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs260160	0.82[CEU][hapmap]
rs260168	1.00[CHD][hapmap]
rs2875517	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[ASN][1000 genomes]
rs61959407	0.95[ASN][1000 genomes]
rs7330064	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7987190	1.00[CHD][hapmap]
rs7987478	1.00[CHB][hapmap]
rs7992494	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7999949	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[ASN][1000 genomes]
rs8001394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9317633	1.00[CHB][hapmap]
rs9317637	0.82[CEU][hapmap]
rs9317642	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9529174	0.82[CEU][hapmap]
rs9529180	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs9529185	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs9529186	0.82[CEU][hapmap]
rs9529187	0.82[CEU][hapmap]
rs9529188	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs9529189	0.95[ASN][1000 genomes]
rs9529190	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9540950	1.00[CHB][hapmap]
rs9540967	1.00[CHB][hapmap]
rs9540971	0.82[CEU][hapmap]
rs9540995	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs9540996	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs9540999	0.82[CEU][hapmap]
rs9541002	1.00[CEU][hapmap]
rs9541004	0.82[CEU][hapmap]
rs9541006	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs9541007	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs9541008	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs9541012	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9541013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9541015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9571705	1.00[CHB][hapmap]
rs9571714	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv832641	chr13:67671691-67708713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67694000-67708400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:67699400-67706600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:67701400-67707200	Weak transcription	A549	lung
4	chr13:67702800-67708200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:67703600-67708400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:67703800-67707600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:67704800-67706600	Enhancers	K562	blood
8	chr13:67705000-67706400	Enhancers	Brain Hippocampus Middle	brain
9	chr13:67705200-67707400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr13:67705200-67707800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:67705600-67706600	Enhancers	Fetal Heart	heart
12	chr13:67705600-67707600	Weak transcription	Brain Anterior Caudate	brain
13	chr13:67705800-67706200	Enhancers	Brain Substantia Nigra	brain
14	chr13:67705800-67706600	Enhancers	Brain Angular Gyrus	brain

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