Variant report

Variant	rs17530416
Chromosome Location	chr11:55857308-55857309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:55857262-55857476	Medullo	brain:	n/a	chr11:55857306-55857313
2	CTCF	chr11:55857278-55857489	H1-hESC	embryonic stem cell:	n/a	chr11:55857306-55857313
3	CTCF	chr11:55856583-55857666	A549	lung:	n/a	chr11:55857306-55857313
4	CTCF	chr11:55857222-55857410	A549	lung:	n/a	chr11:55857306-55857313
5	RAD21	chr11:55857241-55857485	A549	lung:	n/a	n/a
6	CTCF	chr11:55857280-55857430	Caco-2	colon:	n/a	chr11:55857306-55857313
7	CTCF	chr11:55857282-55857482	IMR90	lung:	n/a	chr11:55857306-55857313
8	FOXA1	chr11:55857176-55857491	T-47D	breast:	n/a	n/a
9	CTCF	chr11:55857301-55857439	GM13977	blood:	n/a	chr11:55857306-55857313
10	CTCF	chr11:55857300-55857450	GM12801	blood:	n/a	chr11:55857306-55857313
11	CTCF	chr11:55857215-55857476	K562	blood:	n/a	chr11:55857306-55857313
12	RAD21	chr11:55857125-55857583	H1-hESC	embryonic stem cell:	n/a	n/a
13	RAD21	chr11:55857173-55857596	H1-hESC	embryonic stem cell:	n/a	n/a
14	RAD21	chr11:55857154-55857637	H1-hESC	embryonic stem cell:	n/a	n/a
15	RAD21	chr11:55857158-55857618	A549	lung:	n/a	n/a
16	CTCF	chr11:55857297-55857435	LNCaP	prostate:	n/a	chr11:55857306-55857313
17	CTCF	chr11:55857275-55857526	A549	lung:	n/a	chr11:55857306-55857313
18	CTCF	chr11:55857304-55857452	LNCaP	prostate:	n/a	chr11:55857306-55857313
19	RAD21	chr11:55857267-55857517	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
OR8I2	TF binding region

Extended variants
information (count: 215 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs11227518	1.00[CEU][hapmap]
rs12099295	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12270268	1.00[CEU][hapmap]
rs17510848	1.00[CEU][hapmap]
rs17510876	1.00[CEU][hapmap]
rs17511051	1.00[CEU][hapmap]
rs17514608	0.91[EUR][1000 genomes]
rs17527401	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17527710	0.89[EUR][1000 genomes]
rs17527788	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17527850	0.91[EUR][1000 genomes]
rs17527864	0.91[EUR][1000 genomes]
rs17528782	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17528803	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17530318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530423	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17531417	1.00[CEU][hapmap]
rs17596694	1.00[CEU][hapmap]
rs17597589	1.00[CEU][hapmap]
rs17597625	1.00[CEU][hapmap]
rs17597646	1.00[CEU][hapmap]
rs17598017	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17598045	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17598094	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17599457	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17599471	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17599899	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17599913	0.91[EUR][1000 genomes]
rs17600692	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17600784	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17600820	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17600939	1.00[CEU][hapmap]
rs17601361	1.00[CEU][hapmap]
rs17601459	1.00[CEU][hapmap]
rs17603011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17603260	1.00[CEU][hapmap]
rs17610726	1.00[CEU][hapmap]
rs1947923	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2170446	1.00[CEU][hapmap]
rs2449138	0.94[EUR][1000 genomes]
rs2512932	0.94[EUR][1000 genomes]
rs2512961	1.00[CEU][hapmap]
rs28421520	1.00[EUR][1000 genomes]
rs28537497	1.00[EUR][1000 genomes]
rs28688517	1.00[EUR][1000 genomes]
rs2870138	1.00[CEU][hapmap]
rs4338547	1.00[CEU][hapmap]
rs5018553	0.91[EUR][1000 genomes]
rs55696205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833459	0.91[EUR][1000 genomes]
rs55833816	0.89[EUR][1000 genomes]
rs56057397	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56149224	0.86[AMR][1000 genomes]
rs56176720	0.91[EUR][1000 genomes]
rs56178210	0.91[EUR][1000 genomes]
rs56208265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56301431	0.91[EUR][1000 genomes]
rs56370444	0.91[EUR][1000 genomes]
rs56393785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402650	0.89[EUR][1000 genomes]
rs61746167	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61887074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61887142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61888467	0.87[EUR][1000 genomes]
rs61888468	0.94[EUR][1000 genomes]
rs61888469	0.94[EUR][1000 genomes]
rs61888470	0.94[EUR][1000 genomes]
rs61888471	0.94[EUR][1000 genomes]
rs61888472	0.94[EUR][1000 genomes]
rs61888473	0.94[EUR][1000 genomes]
rs61888545	0.94[EUR][1000 genomes]
rs61888546	0.94[EUR][1000 genomes]
rs61889622	0.87[EUR][1000 genomes]
rs61889973	0.94[EUR][1000 genomes]
rs61889974	0.94[EUR][1000 genomes]
rs61889975	0.94[EUR][1000 genomes]
rs61891189	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61891190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61891197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891202	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61891210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61894199	0.89[EUR][1000 genomes]
rs61894201	0.89[EUR][1000 genomes]
rs61894202	0.89[EUR][1000 genomes]
rs61894203	0.89[EUR][1000 genomes]
rs61894213	0.89[EUR][1000 genomes]
rs61894214	0.89[EUR][1000 genomes]
rs61894215	0.89[EUR][1000 genomes]
rs61894216	0.87[EUR][1000 genomes]
rs61895181	0.91[EUR][1000 genomes]
rs61895182	0.91[EUR][1000 genomes]
rs61895183	0.91[EUR][1000 genomes]
rs61895184	0.91[EUR][1000 genomes]
rs61895240	0.91[EUR][1000 genomes]
rs61895241	0.91[EUR][1000 genomes]
rs61895243	0.91[EUR][1000 genomes]
rs61895244	0.91[EUR][1000 genomes]
rs61895245	0.91[EUR][1000 genomes]
rs61895246	0.91[EUR][1000 genomes]
rs61895247	0.91[EUR][1000 genomes]
rs61895248	0.91[EUR][1000 genomes]
rs61895249	0.91[EUR][1000 genomes]
rs61895250	0.87[EUR][1000 genomes]
rs61895251	0.91[EUR][1000 genomes]
rs61895252	0.91[EUR][1000 genomes]
rs61895253	0.91[EUR][1000 genomes]
rs61895254	0.91[EUR][1000 genomes]
rs61895255	0.91[EUR][1000 genomes]
rs61895256	0.91[EUR][1000 genomes]
rs61895257	0.91[EUR][1000 genomes]
rs61895258	0.91[EUR][1000 genomes]
rs61895259	0.91[EUR][1000 genomes]
rs61896168	0.91[EUR][1000 genomes]
rs61896169	0.91[EUR][1000 genomes]
rs61896182	0.91[EUR][1000 genomes]
rs61896183	0.91[EUR][1000 genomes]
rs61896184	0.91[EUR][1000 genomes]
rs61896235	0.91[EUR][1000 genomes]
rs61896236	0.89[EUR][1000 genomes]
rs61896237	0.91[EUR][1000 genomes]
rs61896238	0.91[EUR][1000 genomes]
rs61896240	0.91[EUR][1000 genomes]
rs61896241	0.91[EUR][1000 genomes]
rs61896242	0.84[EUR][1000 genomes]
rs61896244	0.91[EUR][1000 genomes]
rs61896245	0.91[EUR][1000 genomes]
rs61896247	0.91[EUR][1000 genomes]
rs61896248	0.91[EUR][1000 genomes]
rs61896249	0.91[EUR][1000 genomes]
rs61896250	0.91[EUR][1000 genomes]
rs61896251	0.91[EUR][1000 genomes]
rs61896253	0.91[EUR][1000 genomes]
rs61896254	0.91[EUR][1000 genomes]
rs61896255	0.91[EUR][1000 genomes]
rs61896256	0.91[EUR][1000 genomes]
rs61896257	0.91[EUR][1000 genomes]
rs61896258	0.91[EUR][1000 genomes]
rs61896259	0.91[EUR][1000 genomes]
rs61896960	0.91[EUR][1000 genomes]
rs61896961	0.91[EUR][1000 genomes]
rs61896962	0.91[EUR][1000 genomes]
rs61896963	0.91[EUR][1000 genomes]
rs61896964	0.91[EUR][1000 genomes]
rs61896965	0.91[EUR][1000 genomes]
rs61896966	0.91[EUR][1000 genomes]
rs7102893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104912	0.92[EUR][1000 genomes]
rs7109136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109807	0.91[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110317	1.00[CEU][hapmap]
rs7110689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112887	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7113176	0.90[CEU][hapmap]
rs7113418	1.00[CEU][hapmap]
rs7113601	0.92[EUR][1000 genomes]
rs7114852	0.91[EUR][1000 genomes]
rs7114865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119253	1.00[CEU][hapmap]
rs7125690	1.00[CEU][hapmap]
rs7128453	0.94[EUR][1000 genomes]
rs7131505	0.92[EUR][1000 genomes]
rs7131616	0.92[EUR][1000 genomes]
rs7925870	0.91[EUR][1000 genomes]
rs7926784	0.91[EUR][1000 genomes]
rs7929811	0.91[EUR][1000 genomes]
rs7931694	0.91[EUR][1000 genomes]
rs7935009	0.91[EUR][1000 genomes]
rs7936720	1.00[CEU][hapmap]
rs7937610	0.91[EUR][1000 genomes]
rs7942859	0.91[EUR][1000 genomes]
rs7942981	0.91[EUR][1000 genomes]
rs7943492	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945499	0.91[EUR][1000 genomes]
rs7948567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949262	0.91[EUR][1000 genomes]
rs9665861	1.00[CEU][hapmap]
rs9666086	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
11	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
15	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
16	esv2752700	chr11:55830265-55896015	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
17	nsv468575	chr11:55847945-55937954	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
18	nsv555095	chr11:55847945-55937954	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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