Variant report

Variant	rs1754254
Chromosome Location	chr10:25671985-25671986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25670945..25672971-chr10:25675542..25677889,2	K562	blood:
2	chr10:25667594..25669629-chr10:25671940..25673892,2	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10508694	0.83[ASN][1000 genomes]
rs10764543	0.83[ASN][1000 genomes]
rs10828791	0.83[ASN][1000 genomes]
rs10828792	0.83[ASN][1000 genomes]
rs10828793	0.83[ASN][1000 genomes]
rs11014527	0.83[ASN][1000 genomes]
rs11014528	0.82[ASN][1000 genomes]
rs11014529	0.83[ASN][1000 genomes]
rs11014530	0.83[ASN][1000 genomes]
rs1122775	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1122776	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818261	0.83[ASN][1000 genomes]
rs12240665	0.83[ASN][1000 genomes]
rs12249852	0.83[ASN][1000 genomes]
rs12251868	0.83[ASN][1000 genomes]
rs12251917	0.83[ASN][1000 genomes]
rs12254479	0.83[ASN][1000 genomes]
rs12256778	0.83[ASN][1000 genomes]
rs12256851	0.83[ASN][1000 genomes]
rs12258359	0.83[ASN][1000 genomes]
rs12258665	0.83[ASN][1000 genomes]
rs12258671	0.83[ASN][1000 genomes]
rs12259043	0.83[ASN][1000 genomes]
rs12259696	0.83[ASN][1000 genomes]
rs12358447	0.83[ASN][1000 genomes]
rs12764320	0.83[ASN][1000 genomes]
rs12766749	0.83[ASN][1000 genomes]
rs1329264	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329265	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341963	0.99[ASN][1000 genomes]
rs1341964	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1341966	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1576317	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576318	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1576320	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576321	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590836	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1591249	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591250	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1612200	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626372	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628986	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1630323	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1632593	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754253	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754255	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754256	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754257	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754258	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754260	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754264	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754265	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754268	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754269	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754270	0.87[AFR][1000 genomes]
rs1754271	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1760716	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760726	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760727	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760728	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760729	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760730	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760733	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760734	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760735	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760755	0.84[ASN][1000 genomes]
rs1760758	0.89[ASN][1000 genomes]
rs1760759	0.89[ASN][1000 genomes]
rs1760762	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1760763	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760764	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760765	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773607	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773608	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773609	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773612	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773614	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773616	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773618	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773622	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773623	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773648	0.84[ASN][1000 genomes]
rs1773649	0.85[ASN][1000 genomes]
rs1773650	0.85[ASN][1000 genomes]
rs1773651	0.84[ASN][1000 genomes]
rs1773689	0.99[ASN][1000 genomes]
rs1773690	0.99[ASN][1000 genomes]
rs2262989	0.84[ASN][1000 genomes]
rs2807245	0.85[ASN][1000 genomes]
rs2807247	0.80[ASN][1000 genomes]
rs35663899	0.83[ASN][1000 genomes]
rs35973294	0.83[ASN][1000 genomes]
rs4351726	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476972	0.84[ASN][1000 genomes]
rs489052	0.85[ASN][1000 genomes]
rs489186	0.85[ASN][1000 genomes]
rs495338	0.85[ASN][1000 genomes]
rs495456	0.85[ASN][1000 genomes]
rs516071	0.85[ASN][1000 genomes]
rs518751	0.81[ASN][1000 genomes]
rs541206	0.85[ASN][1000 genomes]
rs573812	0.85[ASN][1000 genomes]
rs7090972	0.83[ASN][1000 genomes]
rs7091686	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094439	0.83[ASN][1000 genomes]
rs824590	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824592	0.89[ASN][1000 genomes]
rs824593	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824597	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs824598	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs824599	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25670000-25673200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25670200-25673400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:25670800-25672600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:25671000-25677000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:25671200-25672200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:25671200-25672200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:25671200-25672200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:25671400-25672400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:25671400-25672400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:25671800-25673000	Enhancers	H1 Cell Line	embryonic stem cell

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