Variant report

Variant	rs1754259
Chromosome Location	chr10:25675277-25675278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1334057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341967	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1361633	0.85[ASN][1000 genomes]
rs1410928	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1410935	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1413395	0.84[ASN][1000 genomes]
rs1413396	0.90[EUR][1000 genomes]
rs1413398	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1418126	0.85[ASN][1000 genomes]
rs1576319	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1612726	0.85[ASN][1000 genomes]
rs1754248	0.85[ASN][1000 genomes]
rs1754252	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754263	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1754266	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1754270	0.88[ASN][1000 genomes]
rs1754276	0.82[ASN][1000 genomes]
rs1754277	0.87[ASN][1000 genomes]
rs1773604	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1773611	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1773615	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773652	0.81[ASN][1000 genomes]
rs1773654	0.86[AMR][1000 genomes]
rs1773655	0.84[ASN][1000 genomes]
rs1773656	0.85[ASN][1000 genomes]
rs1773657	0.85[ASN][1000 genomes]
rs1773658	0.85[ASN][1000 genomes]
rs1773659	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1773688	0.87[ASN][1000 genomes]
rs7072189	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7081326	0.85[ASN][1000 genomes]
rs7097708	0.85[ASN][1000 genomes]
rs7924230	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs824591	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs824594	0.90[ASN][1000 genomes]
rs824596	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs824601	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs824602	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs824604	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844042	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25671000-25677000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:25673000-25677200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:25673000-25679200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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