Variant report
| Variant | rs1754266 |
|---|---|
| Chromosome Location | chr10:25678365-25678366 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1334057 | 0.94[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1341967 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1410928 | 0.83[AMR][1000 genomes] |
| rs1410935 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1576319 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1754252 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1754259 | 0.94[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1754263 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1754270 | 0.80[ASN][1000 genomes] |
| rs1773604 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1773611 | 0.84[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1773615 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1773654 | 0.83[AMR][1000 genomes] |
| rs1773659 | 0.90[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7072189 | 0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7924230 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs824591 | 0.89[ASN][1000 genomes] |
| rs824594 | 0.82[ASN][1000 genomes] |
| rs824596 | 0.86[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs824601 | 0.90[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs824602 | 0.90[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs824604 | 0.90[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs844042 | 0.90[AMR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761583 | chr10:25525657-25722444 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3342880 | chr10:25644995-25682820 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv550226 | chr10:25653017-25693426 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25673000-25679200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr10:25677200-25680000 | ZNF genes & repeats | Cortex derived primary cultured neurospheres | brain |
