Variant report

Variant	rs1754270
Chromosome Location	chr10:25684048-25684049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10741085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10764548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828774	0.94[CEU][hapmap];0.84[YRI][hapmap]
rs10828776	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10828800	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11014552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1122775	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1122776	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1148154	0.83[CEU][hapmap]
rs1329258	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1329259	0.87[YRI][hapmap]
rs1329263	1.00[YRI][hapmap]
rs1329264	0.87[AFR][1000 genomes]
rs1329265	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1329267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1329268	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1334057	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1341961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1341962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1341967	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1361633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1410928	1.00[JPT][hapmap]
rs1410935	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1413395	0.89[ASN][1000 genomes]
rs1413398	0.95[JPT][hapmap]
rs1418126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1418129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1576317	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1576318	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1576319	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1576320	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1576321	0.92[AFR][1000 genomes]
rs1591249	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1612200	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1612726	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1626372	0.94[AFR][1000 genomes]
rs1628986	0.83[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1630323	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1632593	0.87[AFR][1000 genomes]
rs1754246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1754248	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1754251	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs1754252	0.88[ASN][1000 genomes]
rs1754253	0.84[CEU][hapmap]
rs1754254	0.87[AFR][1000 genomes]
rs1754255	0.87[AFR][1000 genomes]
rs1754256	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1754258	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1754259	0.88[ASN][1000 genomes]
rs1754260	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1754263	0.86[ASN][1000 genomes]
rs1754264	0.87[AFR][1000 genomes]
rs1754266	0.80[ASN][1000 genomes]
rs1754269	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1754276	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1754277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1760727	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1760728	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1760729	0.86[AFR][1000 genomes]
rs1760733	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1760734	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1760735	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1760750	0.95[JPT][hapmap]
rs1760757	0.95[JPT][hapmap]
rs1760762	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1760763	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1760764	0.87[AFR][1000 genomes]
rs1760765	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1760766	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs1760767	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs1773604	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1773607	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1773608	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1773609	0.90[AFR][1000 genomes]
rs1773611	0.81[ASN][1000 genomes]
rs1773612	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1773614	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1773615	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1773616	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1773617	0.93[YRI][hapmap]
rs1773618	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1773623	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1773624	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1773625	0.83[CEU][hapmap];0.96[YRI][hapmap]
rs1773631	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1773652	0.82[ASN][1000 genomes]
rs1773654	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1773655	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1773656	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1773657	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1773658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773659	0.85[ASN][1000 genomes]
rs1773663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1773678	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1773681	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1773682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1773688	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1854471	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1855461	1.00[YRI][hapmap]
rs1855462	0.90[JPT][hapmap]
rs2480351	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs3949311	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4271295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4351726	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs4405201	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4749022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs495456	0.80[CEU][hapmap]
rs539357	0.95[JPT][hapmap]
rs545905	0.95[JPT][hapmap]
rs564371	0.95[JPT][hapmap]
rs577382	0.95[JPT][hapmap]
rs7072189	0.87[ASN][1000 genomes]
rs7079892	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs7081326	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7091686	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7097708	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs722537	1.00[YRI][hapmap]
rs7392687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs768540	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7924230	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs824591	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs824594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs824596	0.89[ASN][1000 genomes]
rs824601	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs824602	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs824604	0.87[ASN][1000 genomes]
rs824605	0.82[ASN][1000 genomes]
rs844042	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs956085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs956086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs956088	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs961027	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25680600-25686000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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