Variant report

Variant	rs17548679
Chromosome Location	chr11:56401476-56401477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR5AR1-1	chr11:56399649-56402130	ucscGeneNc_uc001njj_1

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10501355	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17546536	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17547207	1.00[CEU][hapmap]
rs17547284	1.00[CEU][hapmap]
rs17547542	1.00[CEU][hapmap]
rs17547806	1.00[CEU][hapmap]
rs17548700	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17548819	1.00[CEU][hapmap]
rs17549606	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17559037	0.83[CEU][hapmap]
rs17628586	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17628691	0.92[EUR][1000 genomes]
rs17629033	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17629218	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17629804	1.00[CEU][hapmap]
rs17629861	1.00[CEU][hapmap]
rs17630028	1.00[CEU][hapmap]
rs17630040	0.91[CEU][hapmap]
rs1807254	0.92[EUR][1000 genomes]
rs1876924	1.00[CEU][hapmap]
rs1945237	1.00[CEU][hapmap]
rs1945262	1.00[CEU][hapmap]
rs55771448	0.92[EUR][1000 genomes]
rs55874240	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56078926	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56163075	0.91[EUR][1000 genomes]
rs56394926	0.86[EUR][1000 genomes]
rs61902171	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902203	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902209	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902863	0.92[EUR][1000 genomes]
rs61902883	0.92[EUR][1000 genomes]
rs61902885	0.92[EUR][1000 genomes]
rs61902915	0.92[EUR][1000 genomes]
rs61902916	0.92[EUR][1000 genomes]
rs61902921	0.92[EUR][1000 genomes]
rs61903268	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903273	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903306	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903313	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903316	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61903320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903347	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61904062	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904063	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61904064	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904562	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61904563	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61904564	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904565	0.83[EUR][1000 genomes]
rs61904579	0.83[AMR][1000 genomes]
rs61904584	0.83[AMR][1000 genomes]
rs61904586	0.83[AMR][1000 genomes]
rs6591380	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114870	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7121991	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7130906	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7925450	1.00[CEU][hapmap]
rs7935533	1.00[CEU][hapmap]
rs7939771	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv971952	chr11:56361311-56452186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
7	nsv975341	chr11:56381903-56407581	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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