Variant report

Variant	rs17574819
Chromosome Location	chr4:48245510-48245511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:48240534..48242411-chr4:48244671..48246642,3	K562	blood:
2	chr4:48242584..48244534-chr4:48245317..48247606,2	K562	blood:
3	chr4:48238807..48240507-chr4:48244867..48247720,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10454242	1.00[JPT][hapmap]
rs12500187	1.00[JPT][hapmap];0.84[AFR][1000 genomes]
rs12504870	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507853	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103259	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13104355	0.97[EUR][1000 genomes]
rs13114469	1.00[JPT][hapmap]
rs13120599	0.97[EUR][1000 genomes]
rs13121247	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125176	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1355218	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17471308	0.97[EUR][1000 genomes]
rs17471321	0.97[EUR][1000 genomes]
rs17574806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17574847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2352597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664021	0.84[CEU][hapmap];0.97[EUR][1000 genomes]
rs2664030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704403	0.97[EUR][1000 genomes]
rs2704404	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs2704412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34292660	0.97[EUR][1000 genomes]
rs34712902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35602964	0.84[AFR][1000 genomes]
rs35912788	0.97[EUR][1000 genomes]
rs35920857	0.97[EUR][1000 genomes]
rs36103122	0.97[EUR][1000 genomes]
rs4694891	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55657817	0.97[EUR][1000 genomes]
rs60092950	0.95[EUR][1000 genomes]
rs6826144	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs6850058	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs73246007	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73817608	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7658983	0.97[EUR][1000 genomes]
rs7659013	0.97[EUR][1000 genomes]
rs7663382	0.97[EUR][1000 genomes]
rs7669018	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678247	0.96[EUR][1000 genomes]
rs7678843	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs7698045	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9996158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
4	nsv1006610	chr4:48209294-48415387	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv537085	chr4:48209294-48415387	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48230000-48245600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:48237000-48246200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:48239200-48246600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:48241400-48246600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:48242400-48246200	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:48242400-48246400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:48242600-48252600	Weak transcription	Aorta	Aorta
8	chr4:48244800-48245600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:48244800-48245600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:48244800-48246600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:48245000-48246400	Enhancers	Fetal Intestine Large	intestine
12	chr4:48245200-48245600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
13	chr4:48245200-48245800	Flanking Active TSS	K562	blood
14	chr4:48245200-48246600	Enhancers	Monocytes-CD14+_RO01746	blood

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