Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11120760	1.00[JPT][hapmap]
rs12030122	0.80[CEU][hapmap]
rs17649639	1.00[CHB][hapmap]
rs17650989	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1805048	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2926178	1.00[CHB][hapmap]
rs301743	1.00[CHB][hapmap]
rs301748	1.00[CHB][hapmap]
rs301751	1.00[CHB][hapmap]
rs301753	1.00[CHB][hapmap]
rs301755	1.00[CHB][hapmap]
rs301756	1.00[CHB][hapmap]
rs301757	1.00[CHB][hapmap]
rs301758	1.00[CHB][hapmap]
rs3106400	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368107	1.00[CHB][hapmap]
rs386851	1.00[CHB][hapmap]
rs400358	1.00[CHB][hapmap]
rs403340	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs414373	1.00[CHB][hapmap]
rs446247	1.00[CHB][hapmap]
rs448588	1.00[CHB][hapmap]
rs449118	1.00[CHB][hapmap]
rs452747	1.00[CHB][hapmap]
rs453273	1.00[CHB][hapmap]
rs45594833	1.00[AFR][1000 genomes]
rs471271	1.00[CHB][hapmap]
rs594799	1.00[CHB][hapmap]
rs656949	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs658740	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs682319	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs687476	1.00[CHB][hapmap]
rs700024	0.81[CEU][hapmap]
rs7413858	1.00[CHB][hapmap]
rs7532570	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs7534889	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs9729724	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv998835	chr1:216439672-216482235	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2830096	chr1:216454483-216475542	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216462400-216463000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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