Variant report

Variant	rs1760956
Chromosome Location	chr14:65671912-65671913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65665649..65668443-chr14:65670507..65672924,2	K562	blood:
2	chr14:65665995..65668443-chr14:65670507..65672680,2	K562	blood:
3	chr14:65670192..65672045-chr14:65675137..65676974,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1620873	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1679879	0.88[JPT][hapmap]
rs1679881	0.87[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1760983	0.81[JPT][hapmap]
rs6573592	0.80[AFR][1000 genomes]
rs6573593	0.88[JPT][hapmap]
rs766907	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1760956	PLEK2	cis	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65669000-65673400	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65670200-65672800	Enhancers	Primary B cells from cord blood	blood
3	chr14:65670200-65678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:65670400-65673200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:65671000-65672200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:65671000-65672600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:65671000-65672600	Enhancers	Dnd41	blood
8	chr14:65671000-65672800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:65671000-65677400	Enhancers	Fetal Thymus	thymus
10	chr14:65671200-65672000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:65671200-65672800	Enhancers	Fetal Intestine Large	intestine
12	chr14:65671200-65672800	Enhancers	Fetal Intestine Small	intestine
13	chr14:65671200-65672800	Enhancers	Spleen	Spleen
14	chr14:65671200-65675800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr14:65671400-65672000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:65671400-65672000	Flanking Active TSS	HepG2	liver
17	chr14:65671400-65672200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:65671400-65672600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:65671400-65672800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr14:65671400-65673400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr14:65671400-65673600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:65671400-65675800	Enhancers	Primary hematopoietic stem cells	blood
23	chr14:65671600-65672000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr14:65671600-65672000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr14:65671600-65672000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr14:65671600-65672200	Flanking Active TSS	GM12878-XiMat	blood
27	chr14:65671600-65672800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:65671600-65674000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr14:65671600-65675800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr14:65671600-65678800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr14:65671800-65672000	Enhancers	NHDF-Ad	bronchial
32	chr14:65671800-65672800	Enhancers	Stomach Mucosa	stomach
33	chr14:65671800-65673400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:65671800-65674200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:65671800-65674200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:65671800-65675400	Enhancers	Duodenum Mucosa	Duodenum
37	chr14:65671800-65678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:65671800-65678800	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links