Variant report

Variant	rs1760959
Chromosome Location	chr14:65697156-65697157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65689494..65692237-chr14:65695472..65698101,2	K562	blood:
2	chr14:65694260..65697862-chr14:65826001..65829124,3	MCF-7	breast:
3	chr14:64969629..64971559-chr14:65694755..65697380,2	MCF-7	breast:
4	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
5	chr14:65696039..65697546-chr14:65753255..65754853,2	MCF-7	breast:
6	chr14:65696604..65698657-chr14:65706204..65708336,3	K562	blood:
7	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
8	chr14:65693679..65698667-chr14:65701405..65705460,7	MCF-7	breast:
9	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs899963	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65691400-65697600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65691800-65698600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65693400-65704200	Weak transcription	Gastric	stomach
4	chr14:65695200-65697400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:65695400-65698800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:65695400-65699000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:65696200-65697200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:65696200-65697200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:65696200-65697200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:65696200-65697200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:65696200-65697200	Flanking Active TSS	Brain Cingulate Gyrus	brain
12	chr14:65696200-65697200	Active TSS	Colon Smooth Muscle	Colon
13	chr14:65696200-65697200	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr14:65696200-65697200	Enhancers	Fetal Brain Male	brain
15	chr14:65696200-65697200	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr14:65696200-65697400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:65696200-65697400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr14:65696200-65697400	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr14:65696200-65697400	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr14:65696200-65697400	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr14:65696200-65697400	Active TSS	Fetal Brain Female	brain
22	chr14:65696200-65697400	Enhancers	Fetal Heart	heart
23	chr14:65696200-65697400	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr14:65696200-65697400	Active TSS	Psoas Muscle	Psoas
25	chr14:65696200-65697400	Active TSS	Rectal Smooth Muscle	rectum
26	chr14:65696200-65697400	Flanking Active TSS	HUVEC	blood vessel
27	chr14:65696400-65697200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:65696400-65697200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:65696400-65697200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:65696400-65697200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:65696400-65697200	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr14:65696400-65697200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr14:65696400-65697200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:65696400-65697200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:65696400-65697200	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr14:65696400-65697200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr14:65696400-65697200	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr14:65696400-65697200	Flanking Active TSS	Fetal Muscle Leg	muscle
39	chr14:65696400-65697200	Flanking Active TSS	Fetal Stomach	stomach
40	chr14:65696400-65697200	Flanking Active TSS	Fetal Thymus	thymus
41	chr14:65696400-65697200	Active TSS	Ovary	ovary
42	chr14:65696400-65697200	Flanking Active TSS	Pancreas	Pancrea
43	chr14:65696400-65697200	Active TSS	Right Ventricle	heart
44	chr14:65696400-65697200	Flanking Active TSS	Thymus	Thymus
45	chr14:65696400-65697200	Flanking Active TSS	HMEC	breast
46	chr14:65696400-65697200	Flanking Active TSS	NH-A	brain
47	chr14:65696400-65697400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:65696400-65697400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr14:65696400-65697400	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr14:65696400-65697400	Flanking Active TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links