Variant report

Variant	rs1760981
Chromosome Location	chr14:65653895-65653896
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65649526..65652091-chr14:65652657..65655618,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1679879	0.80[AMR][1000 genomes]
rs1760983	0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs1760984	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1760981	SYNE2	cis	cerebellum	SCAN
rs1760981	HSPA2	cis	parietal	SCAN
rs1760981	C14orf39	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65647800-65659800	Weak transcription	Fetal Intestine Large	intestine
3	chr14:65651200-65654400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:65651400-65654400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:65651400-65658200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:65652400-65655800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:65652600-65655400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr14:65652800-65655400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:65653200-65654200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:65653200-65654600	Enhancers	GM12878-XiMat	blood
11	chr14:65653400-65654000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr14:65653400-65654200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr14:65653400-65654800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:65653600-65654200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:65653600-65654600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr14:65653600-65654600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr14:65653600-65654600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr14:65653600-65654800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:65653600-65654800	Enhancers	Primary B cells from peripheral blood	blood
20	chr14:65653800-65654600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:65653800-65654800	Enhancers	Primary B cells from cord blood	blood

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