Variant report

Variant	rs17611906
Chromosome Location	chr1:216735371-216735372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216734438..216737180-chr1:216741885..216744740,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10495030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11117618	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11117629	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11117630	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11117631	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11572723	0.82[CEU][hapmap]
rs11572745	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11572747	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11572764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572766	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577585	0.82[CEU][hapmap]
rs1498284	0.84[CEU][hapmap]
rs17042848	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17668665	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17669321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs17671115	0.84[CEU][hapmap]
rs1833039	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs1976331	0.84[CEU][hapmap]
rs2152472	0.84[CEU][hapmap]
rs2173372	0.84[CEU][hapmap]
rs35508539	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55635948	0.85[EUR][1000 genomes]
rs72735199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737309	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72737310	0.85[EUR][1000 genomes]
rs72737313	0.85[EUR][1000 genomes]
rs72737316	0.85[EUR][1000 genomes]
rs72737323	0.85[EUR][1000 genomes]
rs72737329	0.83[EUR][1000 genomes]
rs72737330	0.82[EUR][1000 genomes]
rs72737331	0.83[EUR][1000 genomes]
rs72737332	0.83[EUR][1000 genomes]
rs7520795	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs945452	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873178	chr1:216714314-216813244	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv4565	chr1:216720070-216765053	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216708800-216744600	Weak transcription	Left Ventricle	heart
2	chr1:216721800-216774000	Weak transcription	Placenta	Placenta
3	chr1:216732800-216735800	Enhancers	Fetal Heart	heart
4	chr1:216734200-216736600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links