Variant report

Variant	rs1761285
Chromosome Location	chr9:72080317-72080318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1029066	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10780336	0.82[JPT][hapmap]
rs10867453	0.81[JPT][hapmap]
rs10867655	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10867656	1.00[ASW][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11138435	0.81[JPT][hapmap]
rs1217339	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1234632	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1330329	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1331973	0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1331974	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1331976	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1331977	0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1806760	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1888834	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2150878	0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2777862	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2777863	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777865	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2781533	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2781535	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2991694	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2991695	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3737172	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3737175	0.83[ASN][1000 genomes]
rs4323531	0.82[AFR][1000 genomes]
rs4492445	0.82[JPT][hapmap]
rs4744569	0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6559613	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7019125	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7021184	0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7024302	0.81[JPT][hapmap]
rs7035141	0.81[JPT][hapmap]
rs7049022	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717108	0.86[ASN][1000 genomes]
rs7850318	0.87[AFR][1000 genomes]
rs7850597	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7853648	0.81[ASW][hapmap]
rs7858171	0.81[ASW][hapmap];0.81[MEX][hapmap]
rs7860931	0.81[ASW][hapmap]
rs7866199	0.81[ASW][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7872660	0.91[ASW][hapmap];0.93[LWK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs879767	0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs914551	0.92[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9410852	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9776833	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1052872	chr9:72040184-72081554	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037109	chr9:72040184-72120270	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72036600-72082600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72044200-72084400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:72045000-72084400	Weak transcription	Fetal Intestine Large	intestine
4	chr9:72046400-72085600	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:72047000-72081800	Weak transcription	Fetal Kidney	kidney
6	chr9:72056000-72082600	Weak transcription	Pancreas	Pancrea
7	chr9:72056400-72080800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:72064600-72084200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:72064600-72084200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:72064800-72083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:72066200-72081000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:72067600-72080800	Weak transcription	NHDF-Ad	bronchial
13	chr9:72067800-72080800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:72069000-72080600	Weak transcription	Left Ventricle	heart
15	chr9:72070600-72081000	Weak transcription	Brain Substantia Nigra	brain
16	chr9:72070800-72085600	Weak transcription	Gastric	stomach
17	chr9:72071000-72080400	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:72071400-72080800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:72071600-72080400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:72072000-72080400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:72072000-72080600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:72072400-72084000	Weak transcription	Fetal Heart	heart
23	chr9:72075200-72080400	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:72075200-72081200	Weak transcription	Fetal Lung	lung
25	chr9:72075600-72081200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:72076400-72080600	Weak transcription	Fetal Brain Female	brain
27	chr9:72077200-72086800	Weak transcription	Fetal Brain Male	brain
28	chr9:72077400-72081400	Weak transcription	Brain Anterior Caudate	brain
29	chr9:72077800-72080600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:72077800-72082600	Weak transcription	Aorta	Aorta
31	chr9:72078400-72081400	Enhancers	Liver	Liver
32	chr9:72078400-72084000	Weak transcription	Placenta	Placenta
33	chr9:72079000-72081000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:72079000-72084000	Weak transcription	HUVEC	blood vessel
35	chr9:72079000-72086400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:72079000-72091600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:72079200-72080400	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr9:72079200-72080600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:72079200-72086200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:72079600-72082200	Strong transcription	Fetal Stomach	stomach
41	chr9:72079600-72083000	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr9:72079800-72082400	Strong transcription	Spleen	Spleen
43	chr9:72079800-72082800	Strong transcription	Brain Germinal Matrix	brain
44	chr9:72079800-72085000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr9:72080000-72080400	Enhancers	Fetal Thymus	thymus
46	chr9:72080000-72081000	Enhancers	Adipose Nuclei	Adipose
47	chr9:72080000-72081200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:72080000-72081600	Enhancers	Ovary	ovary
49	chr9:72080000-72083000	Strong transcription	Brain Cingulate Gyrus	brain
50	chr9:72080200-72080800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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