Variant report

Variant	rs17614110
Chromosome Location	chr18:24429169-24429170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1058427	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11661147	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11661256	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11662880	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11665087	1.00[ASN][1000 genomes]
rs12963250	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12968026	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12970160	1.00[ASN][1000 genomes]
rs1595254	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16942763	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16942806	1.00[ASW][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16942835	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16958776	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1839319	1.00[ASN][1000 genomes]
rs34775621	1.00[ASN][1000 genomes]
rs35248760	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35531875	1.00[ASN][1000 genomes]
rs548220	1.00[ASN][1000 genomes]
rs55875625	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66950491	1.00[ASN][1000 genomes]
rs66985226	1.00[ASN][1000 genomes]
rs67207056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67384004	1.00[ASN][1000 genomes]
rs67461489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68036122	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71353404	1.00[ASN][1000 genomes]
rs72878776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17614110	CHST9	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24423600-24443200	Weak transcription	Psoas Muscle	Psoas
2	chr18:24427600-24442200	Weak transcription	Ovary	ovary
3	chr18:24427800-24443000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr18:24428600-24431400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr18:24428600-24440400	Weak transcription	Brain Substantia Nigra	brain
6	chr18:24429000-24429200	Enhancers	Dnd41	blood

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