Variant report

Variant	rs17615197
Chromosome Location	chr1:194022818-194022819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10494694	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10494695	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11576452	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12402555	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12407160	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12731751	0.88[ASN][1000 genomes]
rs17550167	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17550564	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17615410	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17615584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17615608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17615887	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2119856	0.88[ASN][1000 genomes]
rs2119857	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2224700	0.98[ASN][1000 genomes]
rs34886976	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35224110	0.88[ASN][1000 genomes]
rs57802972	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6670107	0.88[ASN][1000 genomes]
rs74131275	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74131276	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74131280	0.89[AFR][1000 genomes]
rs74131282	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74131285	0.89[AFR][1000 genomes]
rs74131287	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74131289	0.89[AFR][1000 genomes]
rs74131290	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74131293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74131294	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74132716	0.89[AFR][1000 genomes]
rs7511906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7553854	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs958436	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs958437	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv275445	chr1:194021985-194026943	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv467016	chr1:194022818-194037890	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv548665	chr1:194022818-194037890	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194020400-194030800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:194020800-194030800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:194021000-194023600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr1:194021200-194024800	Weak transcription	Small Intestine	intestine
5	chr1:194021200-194027600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:194022200-194023000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:194022200-194024200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr1:194022200-194024400	Weak transcription	Fetal Lung	lung
9	chr1:194022200-194025600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:194022200-194030600	Enhancers	Primary T cells from cord blood	blood
11	chr1:194022200-194030800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:194022400-194024000	Weak transcription	Fetal Thymus	thymus
13	chr1:194022400-194024600	Weak transcription	Thymus	Thymus
14	chr1:194022400-194024800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:194022400-194025000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:194022400-194025200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr1:194022400-194025200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:194022400-194025200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:194022400-194025200	Weak transcription	Stomach Mucosa	stomach
20	chr1:194022400-194027600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:194022400-194029600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr1:194022400-194030800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links