Variant report

Variant	rs17627160
Chromosome Location	chr10:119061632-119061633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119060111..119061670-chr10:119065604..119067838,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11815112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs12256256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17545387	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17627569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628116	0.81[CEU][hapmap]
rs363226	0.84[CEU][hapmap]
rs363285	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865317	0.80[AFR][1000 genomes]
rs7100905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs7900213	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7907208	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7909861	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17627160	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL
rs17627160	C10orf81	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119032600-119063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:119041800-119071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:119042200-119064200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:119043000-119069400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:119043400-119065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:119044800-119077200	Weak transcription	NHDF-Ad	bronchial
9	chr10:119045000-119063200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:119045000-119063200	Weak transcription	Fetal Stomach	stomach
11	chr10:119045000-119070800	Weak transcription	Gastric	stomach
12	chr10:119045000-119081800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:119045400-119071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:119045600-119078600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:119046600-119064200	Weak transcription	HMEC	breast
16	chr10:119049200-119070800	Weak transcription	NH-A	brain
17	chr10:119049400-119063000	Weak transcription	Thymus	Thymus
18	chr10:119049400-119063400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:119049400-119070000	Weak transcription	HSMM	muscle
20	chr10:119049400-119071200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:119049400-119071400	Weak transcription	Aorta	Aorta
22	chr10:119049400-119071400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:119049400-119074000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:119049600-119075800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:119049800-119063000	Weak transcription	Fetal Thymus	thymus
26	chr10:119049800-119063600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:119049800-119068800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:119049800-119069600	Weak transcription	HUVEC	blood vessel
29	chr10:119049800-119070400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:119049800-119070600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:119049800-119071400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:119049800-119074000	Weak transcription	HepG2	liver
33	chr10:119049800-119081800	Weak transcription	Left Ventricle	heart
34	chr10:119049800-119100600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:119049800-119101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:119049800-119102400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr10:119050000-119062000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:119050000-119062400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:119050000-119062800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:119050000-119063000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:119050000-119063000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr10:119050000-119063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:119050000-119070800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:119050000-119071400	Weak transcription	Liver	Liver
45	chr10:119050000-119077000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr10:119050000-119093800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr10:119050000-119101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:119050600-119063200	Weak transcription	Dnd41	blood
49	chr10:119053600-119063000	Weak transcription	A549	lung
50	chr10:119057800-119069800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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