Variant report

Variant	rs17627302
Chromosome Location	chr11:56185738-56185739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:56185737-56185787	PrEC	prostate:	n/a
2	chr11:56185737-56185787	NHBE	bronchial:	n/a
3	chr11:56185737-56185787	HCF	heart:	n/a
4	chr11:56185737-56185787	GM12891	blood:	n/a
5	chr11:56185737-56185787	K562	blood:	n/a
6	chr11:56185737-56185787	HEK293	kidney:	embryo
7	chr11:56185737-56185787	NB4	blood:	n/a
8	chr11:56185737-56185787	HCM	heart:	n/a
9	chr11:56185737-56185787	CMK	blood:	n/a
10	chr11:56185737-56185787	Caco-2	colon:	n/a
11	chr11:56185737-56185787	RPTEC	kidney:	n/a
12	chr11:56185737-56185787	BJ	skin:	n/a
13	chr11:56185737-56185787	T-47D	breast:	n/a
14	chr11:56185737-56185787	HAEpiC	amniotic membrane:	n/a
15	chr11:56185737-56185787	AG04450	lung:	fetal
16	chr11:56185737-56185787	U87	brain:	n/a
17	chr11:56185737-56185787	NT2-D1	testis:	n/a
18	chr11:56185737-56185787	IMR90	lung:	fetal
19	chr11:56185737-56185787	NH-A	brain:	n/a
20	chr11:56185737-56185787	HepG2	liver:	n/a
21	chr11:56185737-56185787	HMEC	breast:	n/a
22	chr11:56185737-56185787	Jurkat	blood:	n/a
23	chr11:56185737-56185787	ECC-1	luminal epithelium:	n/a
24	chr11:56185737-56185787	HRPEpiC	eye:	n/a
25	chr11:56185737-56185787	GM12892	blood:	n/a
26	chr11:56185737-56185787	ovcar-3	ovarian:	n/a
27	chr11:56185737-56185787	HRE	kidney:	n/a
28	chr11:56185737-56185787	GM06990	blood:	n/a
29	chr11:56185737-56185787	ProgFib	skin:	n/a
30	chr11:56185737-56185787	AG10803	skin:	n/a
31	chr11:56185737-56185787	Hepatocyte	liver:	n/a
32	chr11:56185737-56185787	HCPEpiC	choroid plexus:	n/a
33	chr11:56185737-56185787	PFSK-1	brain:	n/a
34	chr11:56185737-56185787	GM12878	blood:	n/a
35	chr11:56185737-56185787	AG09319	gingival:	n/a
36	chr11:56185737-56185787	H1-hESC	embryonic stem cell:	embryo
37	chr11:56185737-56185787	BE2_C	brain:	n/a
38	chr11:56185737-56185787	MCF10A-Er-Src	breast:	n/a
39	chr11:56185737-56185787	AoSMC	blood vessel:	n/a
40	chr11:56185737-56185787	AG09309	skin:	n/a
41	chr11:56185737-56185787	A549	lung:	n/a
42	chr11:56185737-56185787	SK-N-SH_RA	brain:	n/a
43	chr11:56185737-56185787	HNPCEpiC	eye:	n/a
44	chr11:56185737-56185787	PANC-1	pancreas:	n/a
45	chr11:56185737-56185787	HUVEC	blood vessel:	n/a
46	chr11:56185737-56185787	HRCEpiC	kidney:	n/a
47	chr11:56185737-56185787	HEEpiC	esophagus:	n/a
48	chr11:56185737-56185787	SK-N-MC	brain:	n/a
49	chr11:56185737-56185787	LNCaP	prostate:	n/a
50	chr11:56185737-56185787	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
OR5R1	CpG island

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs12272629	0.85[EUR][1000 genomes]
rs17541821	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17541876	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17542961	1.00[CEU][hapmap]
rs17546536	0.97[EUR][1000 genomes]
rs17547207	1.00[CEU][hapmap]
rs17547284	1.00[CEU][hapmap]
rs17547542	1.00[CEU][hapmap]
rs17547806	1.00[CEU][hapmap]
rs17613345	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17614327	1.00[CEU][hapmap]
rs17628586	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17628691	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17629033	0.97[EUR][1000 genomes]
rs17629218	0.97[EUR][1000 genomes]
rs17629804	1.00[CEU][hapmap]
rs17629861	1.00[CEU][hapmap]
rs17630028	1.00[CEU][hapmap]
rs17630040	0.91[CEU][hapmap]
rs1807254	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1876924	1.00[CEU][hapmap]
rs1945237	1.00[CEU][hapmap]
rs1945262	1.00[CEU][hapmap]
rs55706115	0.91[EUR][1000 genomes]
rs55771448	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56077409	0.91[EUR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56163075	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56394926	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61888282	0.85[EUR][1000 genomes]
rs61888286	0.85[EUR][1000 genomes]
rs61888289	0.85[EUR][1000 genomes]
rs61888309	0.85[EUR][1000 genomes]
rs61888312	0.85[EUR][1000 genomes]
rs61888313	0.85[EUR][1000 genomes]
rs61901983	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61902021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902171	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61902863	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902883	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902885	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902915	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902916	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902921	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903478	0.86[EUR][1000 genomes]
rs61903482	0.88[EUR][1000 genomes]
rs61903483	0.88[EUR][1000 genomes]
rs61903484	0.91[EUR][1000 genomes]
rs61903485	0.91[EUR][1000 genomes]
rs61903486	0.91[EUR][1000 genomes]
rs61903487	0.91[EUR][1000 genomes]
rs61903530	0.89[EUR][1000 genomes]
rs61903531	0.89[EUR][1000 genomes]
rs61903536	0.89[EUR][1000 genomes]
rs61903537	0.89[EUR][1000 genomes]
rs61903541	0.89[EUR][1000 genomes]
rs61904062	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs61904063	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61904064	0.97[EUR][1000 genomes]
rs7103598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106248	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7111634	1.00[CEU][hapmap]
rs7114870	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7121384	0.91[EUR][1000 genomes]
rs7121385	0.91[EUR][1000 genomes]
rs7121991	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7123108	1.00[CEU][hapmap]
rs7124023	0.91[EUR][1000 genomes]
rs7125690	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7126549	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7130906	0.97[EUR][1000 genomes]
rs716103	0.85[EUR][1000 genomes]
rs716104	0.85[EUR][1000 genomes]
rs7925450	1.00[CEU][hapmap]
rs7927015	0.91[CEU][hapmap]
rs7932621	0.85[EUR][1000 genomes]
rs7935533	1.00[CEU][hapmap]
rs7942730	1.00[CEU][hapmap]
rs7951134	0.85[EUR][1000 genomes]
rs7951506	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
4	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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