Variant report

Variant	rs17627954
Chromosome Location	chr1:216873939-216873940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11117658	0.88[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs11572706	0.85[GIH][hapmap]
rs11580756	0.88[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1339343	0.88[CEU][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs1416620	0.85[MEX][hapmap]
rs17679272	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35399012	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4259728	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216873200-216875400	Enhancers	Fetal Heart	heart
3	chr1:216873600-216874400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:216873600-216875200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:216873800-216874000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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