Variant report

Variant	rs17632688
Chromosome Location	chr6:38855216-38855217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10305444	1.00[CHB][hapmap]
rs10305487	1.00[CHB][hapmap]
rs10305513	1.00[CHB][hapmap]
rs10305515	1.00[CHB][hapmap]
rs10305519	1.00[CHB][hapmap]
rs10484847	1.00[CHB][hapmap]
rs11751371	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11756771	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11758334	1.00[CHB][hapmap]
rs12192604	1.00[ASN][1000 genomes]
rs12192779	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12192848	1.00[ASN][1000 genomes]
rs12193813	1.00[ASN][1000 genomes]
rs12194119	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197353	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197467	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206059	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12209734	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215108	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12664132	1.00[CHB][hapmap]
rs13192864	1.00[CHB][hapmap]
rs13201998	1.00[CHB][hapmap]
rs13207718	1.00[CHB][hapmap]
rs1738248	1.00[CHB][hapmap]
rs17421805	1.00[CHB][hapmap]
rs17422753	1.00[CHB][hapmap]
rs17552381	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17552881	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17623162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2092550	1.00[ASN][1000 genomes]
rs4279429	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs45578845	1.00[ASN][1000 genomes]
rs55902132	1.00[ASN][1000 genomes]
rs55933840	1.00[ASN][1000 genomes]
rs56093987	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56148146	1.00[ASN][1000 genomes]
rs56246807	1.00[ASN][1000 genomes]
rs56266437	1.00[ASN][1000 genomes]
rs56284095	1.00[ASN][1000 genomes]
rs56323406	1.00[ASN][1000 genomes]
rs579786	1.00[CHB][hapmap]
rs62396392	1.00[ASN][1000 genomes]
rs62396394	1.00[ASN][1000 genomes]
rs62396399	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396403	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396404	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396406	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396408	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905213	1.00[CHB][hapmap]
rs6930771	1.00[CHB][hapmap]
rs6933930	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856585	1.00[ASN][1000 genomes]
rs72856596	1.00[ASN][1000 genomes]
rs72856597	1.00[ASN][1000 genomes]
rs72856598	1.00[ASN][1000 genomes]
rs72858234	1.00[ASN][1000 genomes]
rs72858240	1.00[ASN][1000 genomes]
rs72858280	1.00[ASN][1000 genomes]
rs72858282	1.00[ASN][1000 genomes]
rs72858286	1.00[ASN][1000 genomes]
rs72858288	1.00[ASN][1000 genomes]
rs72858292	1.00[ASN][1000 genomes]
rs72858299	1.00[ASN][1000 genomes]
rs7773144	1.00[ASN][1000 genomes]
rs862433	0.90[CEU][hapmap]
rs9394548	1.00[YRI][hapmap]
rs991766	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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