The 2.0 version of rSNPBase

Variant report

Variant rs17648927
Chromosome Location chr15:52014879-52014880
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:51974200-52018800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr15:51974600-52016400 Weak transcription HUES6 Cell Line embryonic stem cell
3 chr15:51975600-52017200 Weak transcription Fetal Brain Male brain
4 chr15:51984800-52018600 Weak transcription Brain Hippocampus Middle brain
5 chr15:51990000-52016800 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr15:51991400-52018800 Weak transcription H1 Cell Line embryonic stem cell
7 chr15:51992200-52018800 Weak transcription H9 Cell Line embryonic stem cell
8 chr15:51993600-52016800 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr15:51999800-52018200 Weak transcription Fetal Stomach stomach
10 chr15:52000800-52024000 Weak transcription Gastric stomach
11 chr15:52001000-52018600 Weak transcription Pancreas Pancrea
12 chr15:52002800-52016600 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr15:52004400-52016400 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr15:52004800-52018600 Weak transcription Spleen Spleen
15 chr15:52006400-52018400 Weak transcription Fetal Muscle Leg muscle
16 chr15:52007000-52023400 Weak transcription Brain Anterior Caudate brain
17 chr15:52007600-52016800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr15:52007800-52016800 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr15:52007800-52018200 Weak transcription NHDF-Ad bronchial
20 chr15:52008200-52023200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr15:52008400-52018400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr15:52008400-52023400 Weak transcription Brain Inferior Temporal Lobe brain
23 chr15:52008800-52016600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr15:52009000-52016600 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr15:52010800-52018400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr15:52010800-52018400 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr15:52011000-52017000 Weak transcription Adipose Nuclei Adipose
28 chr15:52011200-52018400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr15:52011200-52018600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr15:52011400-52016600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
31 chr15:52011400-52018800 Weak transcription Brain Cingulate Gyrus brain
32 chr15:52011400-52023400 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr15:52011600-52018400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr15:52011600-52023400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr15:52011800-52018200 Weak transcription Hela-S3 cervix
36 chr15:52011800-52018200 Weak transcription HMEC breast
37 chr15:52012000-52016800 Strong transcription Primary B cells from cord blood blood
38 chr15:52012200-52015600 Weak transcription Rectal Smooth Muscle rectum
39 chr15:52012400-52016600 Strong transcription Primary T helper cells fromperipheralblood blood
40 chr15:52012400-52017000 Strong transcription Primary T regulatory cells fromperipheralblood blood
41 chr15:52012400-52017200 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr15:52012400-52024200 Weak transcription Fetal Lung lung
43 chr15:52012800-52015000 Strong transcription Primary hematopoietic stem cells short term culture blood
44 chr15:52012800-52015600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr15:52012800-52017000 Strong transcription Primary T cells fromperipheralblood blood
46 chr15:52012800-52017200 Strong transcription Primary monocytes fromperipheralblood blood
47 chr15:52012800-52017200 Strong transcription Primary B cells from peripheral blood blood
48 chr15:52012800-52018400 Weak transcription Ovary ovary
49 chr15:52013000-52015000 Strong transcription Primary T helper cells PMA-I stimulated --
50 chr15:52013000-52017200 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015