Variant report

Variant	rs17650950
Chromosome Location	chr3:143446436-143446437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16854224	0.92[CEU][hapmap]
rs16854227	0.92[CEU][hapmap]
rs17591646	0.92[CEU][hapmap]
rs17591660	0.92[CEU][hapmap]
rs17651016	0.92[CEU][hapmap]
rs17651124	0.92[CEU][hapmap]
rs17651150	0.92[CEU][hapmap]
rs17651169	0.92[CEU][hapmap]
rs2069040	0.92[CEU][hapmap]
rs7616384	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3411176	chr3:143423880-143457059	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv877567	chr3:143438124-143478454	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143437600-143446800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:143438400-143469800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:143438600-143454200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:143438800-143450400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:143442200-143470200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:143445000-143447400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:143445000-143447600	Enhancers	HSMM	muscle
9	chr3:143445200-143446800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:143445200-143447000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:143445200-143447000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:143445200-143447400	Enhancers	NHDF-Ad	bronchial
13	chr3:143445400-143446800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:143445600-143446600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:143445600-143446600	Weak transcription	NHLF	lung
16	chr3:143445800-143446600	Enhancers	HSMMtube	muscle
17	chr3:143445800-143446800	Enhancers	NHEK	skin
18	chr3:143445800-143447200	Enhancers	Colon Smooth Muscle	Colon
19	chr3:143446200-143446800	Enhancers	Fetal Brain Male	brain
20	chr3:143446200-143447000	Enhancers	Osteobl	bone
21	chr3:143446200-143447400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:143446400-143447600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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