Variant report

Variant	rs17651016
Chromosome Location	chr3:143450272-143450273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16854224	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16854227	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17591646	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17591660	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17650950	0.92[CEU][hapmap]
rs17651124	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17651150	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17651169	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069040	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58187430	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58881945	1.00[EUR][1000 genomes]
rs60468477	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67785207	0.98[EUR][1000 genomes]
rs73154705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154708	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154712	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154719	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73154721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154722	0.84[AMR][1000 genomes]
rs73154727	0.84[AMR][1000 genomes]
rs7616384	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7628206	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3411176	chr3:143423880-143457059	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv877567	chr3:143438124-143478454	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143438400-143469800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:143438600-143454200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143438800-143450400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:143442200-143470200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:143446800-143451000	Weak transcription	Fetal Brain Male	brain
7	chr3:143446800-143454600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:143446800-143460400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:143447400-143450600	Weak transcription	NHLF	lung
10	chr3:143447400-143469800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:143447600-143454800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:143448600-143451800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr3:143449000-143450800	Enhancers	Fetal Lung	lung
14	chr3:143450000-143452800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:143450200-143451000	Enhancers	Right Atrium	heart
16	chr3:143450200-143451200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:143450200-143451200	Enhancers	HSMM	muscle

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