Variant report

Variant	rs17651610
Chromosome Location	chr11:57012044-57012045
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57011184..57013387-chr11:57014609..57016452,2	K562	blood:
2	chr11:57010853..57012684-chr11:57014374..57016452,2	K562	blood:
3	chr11:56992366..56994767-chr11:57010638..57012947,2	K562	blood:
4	chr11:56888220..56889882-chr11:57010746..57012751,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10501367	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10896595	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896597	0.94[ASN][1000 genomes]
rs10896599	0.86[ASN][1000 genomes]
rs11228968	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228975	1.00[ASN][1000 genomes]
rs11228976	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228978	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228980	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228982	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11228984	0.92[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11228985	0.97[ASN][1000 genomes]
rs11544374	0.84[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11600878	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11604560	1.00[ASN][1000 genomes]
rs11604778	0.84[ASN][1000 genomes]
rs11605053	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11607817	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419065	0.89[ASN][1000 genomes]
rs12421633	1.00[ASN][1000 genomes]
rs12421755	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792781	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12797769	0.96[ASN][1000 genomes]
rs17572970	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17652078	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892963	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892964	0.94[ASN][1000 genomes]
rs1939489	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1939495	1.00[ASN][1000 genomes]
rs2155230	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155231	0.89[ASN][1000 genomes]
rs2226613	0.96[ASN][1000 genomes]
rs2276038	0.82[JPT][hapmap]
rs2511026	0.85[ASN][1000 genomes]
rs2511029	0.89[ASN][1000 genomes]
rs2511030	0.94[ASN][1000 genomes]
rs2846042	0.94[ASN][1000 genomes]
rs2846049	0.83[ASN][1000 genomes]
rs2846050	0.94[ASN][1000 genomes]
rs2846051	0.87[ASN][1000 genomes]
rs2851722	0.94[ASN][1000 genomes]
rs35610294	0.98[ASN][1000 genomes]
rs3935068	0.95[ASN][1000 genomes]
rs4384399	1.00[ASN][1000 genomes]
rs4565915	0.95[ASN][1000 genomes]
rs479949	0.94[ASN][1000 genomes]
rs4938855	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938857	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938859	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938861	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4939132	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs499318	0.94[ASN][1000 genomes]
rs5012051	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs519277	0.94[ASN][1000 genomes]
rs522656	0.89[ASN][1000 genomes]
rs528101	0.94[ASN][1000 genomes]
rs58295319	0.90[ASN][1000 genomes]
rs590240	0.89[ASN][1000 genomes]
rs599947	0.89[ASN][1000 genomes]
rs625565	0.94[ASN][1000 genomes]
rs652016	0.92[ASN][1000 genomes]
rs654635	0.94[ASN][1000 genomes]
rs6591408	0.82[YRI][hapmap]
rs6591413	1.00[ASN][1000 genomes]
rs6591415	1.00[ASN][1000 genomes]
rs6591416	0.95[ASN][1000 genomes]
rs6591417	0.95[ASN][1000 genomes]
rs7102963	1.00[ASN][1000 genomes]
rs7119375	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7120644	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128371	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7130252	1.00[ASN][1000 genomes]
rs72921992	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7935236	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57005200-57016400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57008800-57016200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:57009600-57012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:57009600-57016600	Weak transcription	Liver	Liver
5	chr11:57009800-57016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:57010000-57012200	Weak transcription	Adipose Nuclei	Adipose
7	chr11:57010000-57012200	Weak transcription	Left Ventricle	heart
8	chr11:57010000-57012800	Weak transcription	Gastric	stomach
9	chr11:57010000-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:57010200-57012200	Weak transcription	Right Atrium	heart
11	chr11:57010400-57012200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:57010400-57012200	Weak transcription	Lung	lung
13	chr11:57010600-57012400	Enhancers	K562	blood
14	chr11:57010800-57012400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:57010800-57012400	Weak transcription	Right Ventricle	heart
16	chr11:57011000-57015000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:57011200-57012400	Weak transcription	Placenta	Placenta
18	chr11:57011400-57012400	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:57012000-57013200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr11:57012000-57013200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:57012000-57013400	Enhancers	Spleen	Spleen

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