Variant report

Variant	rs17656983
Chromosome Location	chr4:147940372-147940373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:147939892..147940886-chr4:148017933..148018857,4	K562	blood:
2	chr4:147939970..147940883-chr4:148787667..148788628,4	K562	blood:
3	chr4:147939981..147941106-chr4:148014945..148015994,5	MCF-7	breast:
4	chr4:147939974..147940929-chr4:148017718..148018845,5	MCF-7	breast:
5	chr4:147940120..147940905-chr4:148014962..148015896,2	MCF-7	breast:
6	chr4:147939977..147940938-chr4:148015247..148015842,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10519821	0.89[EUR][1000 genomes]
rs10519826	0.89[EUR][1000 genomes]
rs10519850	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12498817	0.95[ASN][1000 genomes]
rs12500369	0.89[EUR][1000 genomes]
rs12501143	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501290	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501579	0.89[EUR][1000 genomes]
rs12502103	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12505022	0.82[EUR][1000 genomes]
rs12508180	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508751	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511968	0.89[EUR][1000 genomes]
rs12512057	0.89[EUR][1000 genomes]
rs12512976	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370303	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17021983	0.89[EUR][1000 genomes]
rs17021984	0.89[EUR][1000 genomes]
rs17022031	0.89[EUR][1000 genomes]
rs17022270	0.95[ASN][1000 genomes]
rs17609789	0.89[EUR][1000 genomes]
rs17609810	0.89[EUR][1000 genomes]
rs17609942	0.89[EUR][1000 genomes]
rs17609956	0.89[EUR][1000 genomes]
rs17656106	0.89[EUR][1000 genomes]
rs17656888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17656944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17657124	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41280531	0.89[EUR][1000 genomes]
rs4835054	0.89[EUR][1000 genomes]
rs4835344	0.89[EUR][1000 genomes]
rs4835345	0.89[EUR][1000 genomes]
rs4835347	0.89[EUR][1000 genomes]
rs4835350	0.89[EUR][1000 genomes]
rs4835351	0.89[EUR][1000 genomes]
rs4835353	0.89[EUR][1000 genomes]
rs57054230	0.89[EUR][1000 genomes]
rs57587608	0.93[EUR][1000 genomes]
rs58289064	0.95[ASN][1000 genomes]
rs6814899	0.89[EUR][1000 genomes]
rs6819665	0.89[EUR][1000 genomes]
rs6830880	0.89[EUR][1000 genomes]
rs6832643	0.89[EUR][1000 genomes]
rs6836696	0.89[EUR][1000 genomes]
rs6846438	0.89[EUR][1000 genomes]
rs6857108	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147940000-147941200	Enhancers	Hela-S3	cervix

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