Variant report

Variant	rs17658464
Chromosome Location	chr18:28842181-28842182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 188 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs10163619	0.94[ASN][1000 genomes]
rs10164077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10438909	0.97[ASN][1000 genomes]
rs10438930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11081690	0.94[ASN][1000 genomes]
rs11081691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1154850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1154851	0.94[ASN][1000 genomes]
rs11659665	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs11660608	0.94[ASN][1000 genomes]
rs11660638	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11663622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11663676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11663924	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11664596	0.91[EUR][1000 genomes]
rs11872734	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11873223	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873281	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11875510	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11875560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12606446	0.85[EUR][1000 genomes]
rs12606722	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12607370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12957659	0.90[EUR][1000 genomes]
rs12958069	0.90[EUR][1000 genomes]
rs12958073	0.90[EUR][1000 genomes]
rs12958351	0.91[EUR][1000 genomes]
rs12958377	0.82[EUR][1000 genomes]
rs12959058	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12962355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12963302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12964422	0.90[EUR][1000 genomes]
rs12964443	0.89[EUR][1000 genomes]
rs12964744	0.89[EUR][1000 genomes]
rs12964748	0.89[EUR][1000 genomes]
rs12964839	0.90[EUR][1000 genomes]
rs12964907	0.90[EUR][1000 genomes]
rs12965148	0.89[EUR][1000 genomes]
rs12965177	0.90[EUR][1000 genomes]
rs12965803	0.89[EUR][1000 genomes]
rs12965829	0.89[EUR][1000 genomes]
rs12967407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12969200	1.00[CHB][hapmap]
rs1426309	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1426310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1426311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1460599	0.85[ASN][1000 genomes]
rs1544880	0.86[EUR][1000 genomes]
rs17715828	1.00[CHB][hapmap]
rs1834582	0.97[ASN][1000 genomes]
rs1895902	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2007149	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2042720	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2114269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2162273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2162274	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2199301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2219582	0.94[ASN][1000 genomes]
rs2219583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28372393	0.91[EUR][1000 genomes]
rs28510667	0.91[EUR][1000 genomes]
rs28615832	0.91[EUR][1000 genomes]
rs28633353	0.91[EUR][1000 genomes]
rs2901124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2901125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs34187983	0.91[EUR][1000 genomes]
rs34212801	0.91[EUR][1000 genomes]
rs34248946	0.94[ASN][1000 genomes]
rs34301793	0.90[EUR][1000 genomes]
rs34530511	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34634416	0.91[EUR][1000 genomes]
rs34664857	0.91[EUR][1000 genomes]
rs34743470	0.90[EUR][1000 genomes]
rs35107698	0.82[EUR][1000 genomes]
rs35136508	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35220971	0.91[EUR][1000 genomes]
rs35223713	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35229932	0.91[EUR][1000 genomes]
rs35257361	0.94[ASN][1000 genomes]
rs35257713	0.91[EUR][1000 genomes]
rs35287825	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35362621	0.91[EUR][1000 genomes]
rs35382145	0.94[ASN][1000 genomes]
rs35596545	0.91[EUR][1000 genomes]
rs35909227	0.91[EUR][1000 genomes]
rs3810007	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3810008	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4349226	0.85[EUR][1000 genomes]
rs4356544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[ASN][1000 genomes]
rs4408611	0.91[EUR][1000 genomes]
rs4517864	0.92[EUR][1000 genomes]
rs4539673	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4598984	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55776955	0.91[EUR][1000 genomes]
rs55778425	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55965644	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56088904	0.89[EUR][1000 genomes]
rs56308568	0.91[EUR][1000 genomes]
rs62087700	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62087701	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62087702	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62087703	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62088665	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62090169	0.97[ASN][1000 genomes]
rs62090396	0.80[EUR][1000 genomes]
rs62090401	0.90[EUR][1000 genomes]
rs6506899	0.81[EUR][1000 genomes]
rs6506903	0.91[EUR][1000 genomes]
rs6506904	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6506912	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6506914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6506915	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6506916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs67014182	0.91[EUR][1000 genomes]
rs67550130	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226461	0.91[EUR][1000 genomes]
rs7227412	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7230461	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs7231346	0.94[ASN][1000 genomes]
rs7231460	0.92[EUR][1000 genomes]
rs7232206	0.90[EUR][1000 genomes]
rs7233743	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7234662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7234854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7235354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7235384	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7235951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7235975	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7236225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7236309	0.97[ASN][1000 genomes]
rs7236370	0.94[ASN][1000 genomes]
rs7237370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7237383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7237419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7239695	0.91[EUR][1000 genomes]
rs7240897	0.91[EUR][1000 genomes]
rs7241874	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7242742	0.91[EUR][1000 genomes]
rs7243151	0.91[EUR][1000 genomes]
rs7243262	0.90[EUR][1000 genomes]
rs7243638	0.91[EUR][1000 genomes]
rs7243885	0.90[EUR][1000 genomes]
rs7243922	0.90[EUR][1000 genomes]
rs7243984	0.89[EUR][1000 genomes]
rs7244015	0.91[EUR][1000 genomes]
rs7244050	0.90[EUR][1000 genomes]
rs7244153	0.90[EUR][1000 genomes]
rs7244510	0.90[EUR][1000 genomes]
rs7245008	0.93[EUR][1000 genomes]
rs72914749	0.91[EUR][1000 genomes]
rs765054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8087103	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8087410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8087621	0.97[ASN][1000 genomes]
rs8087786	0.91[EUR][1000 genomes]
rs8088418	0.97[ASN][1000 genomes]
rs8088637	0.91[EUR][1000 genomes]
rs8088973	0.91[EUR][1000 genomes]
rs8089598	0.91[EUR][1000 genomes]
rs8089762	0.91[EUR][1000 genomes]
rs8091151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8091579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8091715	0.91[EUR][1000 genomes]
rs8091847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8091871	0.91[EUR][1000 genomes]
rs8091934	0.97[ASN][1000 genomes]
rs8092044	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs966376	0.92[EUR][1000 genomes]
rs977434	1.00[JPT][hapmap]
rs9944661	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9946611	0.91[EUR][1000 genomes]
rs9947296	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9947444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9948210	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9950209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9950622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9950769	0.91[EUR][1000 genomes]
rs9950949	0.91[EUR][1000 genomes]
rs9950971	0.91[EUR][1000 genomes]
rs9951016	0.91[EUR][1000 genomes]
rs9951341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9956026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9957758	0.91[EUR][1000 genomes]
rs9959406	0.97[ASN][1000 genomes]
rs9962740	0.94[ASN][1000 genomes]
rs9963626	0.91[EUR][1000 genomes]
rs9967293	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28837200-28845400	Weak transcription	Liver	Liver
2	chr18:28840600-28842200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:28840600-28842800	Weak transcription	Stomach Mucosa	stomach
4	chr18:28841200-28842200	Enhancers	GM12878-XiMat	blood
5	chr18:28841400-28842200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:28841400-28844000	Enhancers	Fetal Intestine Small	intestine
7	chr18:28841600-28842200	Enhancers	Fetal Heart	heart
8	chr18:28841600-28842400	Enhancers	HepG2	liver
9	chr18:28841600-28844600	Enhancers	Fetal Intestine Large	intestine
10	chr18:28841800-28842200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:28841800-28842200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:28841800-28842200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:28841800-28842400	Enhancers	Duodenum Mucosa	Duodenum
14	chr18:28841800-28843000	Enhancers	Pancreas	Pancrea
15	chr18:28842000-28842800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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