Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17657926	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1862374	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs193998	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2032855	0.88[EUR][1000 genomes]
rs2080993	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs27032	0.85[CHB][hapmap]
rs3919570	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4358552	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs460690	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56201194	0.89[EUR][1000 genomes]
rs59100135	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6595339	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6595369	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6861004	0.89[EUR][1000 genomes]
rs6866878	0.91[EUR][1000 genomes]
rs6873036	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72503456	0.81[EUR][1000 genomes]
rs73772957	0.81[EUR][1000 genomes]
rs73772959	0.81[EUR][1000 genomes]
rs73772962	0.81[EUR][1000 genomes]
rs754246	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97846000-97857600	Weak transcription	Pancreas	Pancrea
2	chr5:97846000-97859000	Weak transcription	Gastric	stomach
3	chr5:97850600-97855400	Weak transcription	HSMM	muscle
4	chr5:97852800-97857000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:97853200-97855600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:97853200-97855800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:97853800-97855400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:97853800-97856600	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:97854000-97855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:97854000-97855400	Weak transcription	NHDF-Ad	bronchial
11	chr5:97854200-97856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:97854200-97859400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:97854400-97856800	Weak transcription	Fetal Intestine Large	intestine
14	chr5:97854400-97859400	Weak transcription	Stomach Mucosa	stomach
15	chr5:97855000-97855400	Weak transcription	Fetal Intestine Small	intestine
16	chr5:97855000-97855600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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